Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32528
(343 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132904-25|CAB81956.2| 434|Caenorhabditis elegans Hypothetical... 28 1.5
Z81540-10|CAB04398.1| 354|Caenorhabditis elegans Hypothetical p... 28 2.0
U42843-5|AAA83597.2| 375|Caenorhabditis elegans Beclin (human a... 28 2.0
Z68314-7|CAA92662.2| 872|Caenorhabditis elegans Hypothetical pr... 27 2.7
AF039049-4|AAB94250.2| 293|Caenorhabditis elegans Serpentine re... 27 4.7
AC024800-5|AAF60724.1| 966|Caenorhabditis elegans Hypothetical ... 27 4.7
Z81509-2|CAB04155.1| 239|Caenorhabditis elegans Hypothetical pr... 26 6.1
Z69302-6|CAL36504.1| 472|Caenorhabditis elegans Hypothetical pr... 26 8.1
Z46794-2|CAA86774.1| 950|Caenorhabditis elegans Hypothetical pr... 26 8.1
AF036687-1|AAM75374.1| 173|Caenorhabditis elegans Hypothetical ... 26 8.1
AC084152-2|AAM69073.2| 1571|Caenorhabditis elegans Hypothetical ... 26 8.1
>AL132904-25|CAB81956.2| 434|Caenorhabditis elegans Hypothetical
protein Y111B2A.5a protein.
Length = 434
Score = 28.3 bits (60), Expect = 1.5
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -3
Query: 341 ERLHEDVGVYVRVALRGGGVRAEPRHVRRHLADVR 237
ER+ E+ A GGG R E H++R++AD++
Sbjct: 216 ERM-EEAEAEAEAAADGGGARNEVSHLKRYIADLQ 249
>Z81540-10|CAB04398.1| 354|Caenorhabditis elegans Hypothetical
protein F46B3.9 protein.
Length = 354
Score = 27.9 bits (59), Expect = 2.0
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -1
Query: 337 DSMKTSECMCESHCAAAECVPNRVT 263
D +C SHC ECVP+ VT
Sbjct: 172 DQCSHIKCSIGSHCENGECVPDAVT 196
>U42843-5|AAA83597.2| 375|Caenorhabditis elegans Beclin (human
autophagy) homologprotein 1 protein.
Length = 375
Score = 27.9 bits (59), Expect = 2.0
Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Frame = -3
Query: 197 IEHLREPHHQTVIPDMECKV-DCNRDRSELEYRRNKQLLA 81
I +L+E H T IPD++ K+ + + + ELE ++ K+LLA
Sbjct: 94 INYLKENHPTTSIPDLKAKLQNVSDEEKELE-QQLKKLLA 132
>Z68314-7|CAA92662.2| 872|Caenorhabditis elegans Hypothetical
protein F07H5.8 protein.
Length = 872
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -1
Query: 328 KTSECMCESHCAAAECVPNRVTYDVTSQMSASALSC 221
KT C+ C ECV TY ++ M+ +A SC
Sbjct: 616 KTCVPQCQPACTQ-ECVQQATTYTISIPMTTAAPSC 650
>AF039049-4|AAB94250.2| 293|Caenorhabditis elegans Serpentine
receptor, class x protein65 protein.
Length = 293
Score = 26.6 bits (56), Expect = 4.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 243 ICEVTSYVTRFGTHSAAAQCDSHIHSDVFM 332
IC++TSY FG SA +HS +F+
Sbjct: 29 ICKLTSYKHSFGYLSANQALADALHSTIFL 58
>AC024800-5|AAF60724.1| 966|Caenorhabditis elegans Hypothetical
protein Y49F6A.1 protein.
Length = 966
Score = 26.6 bits (56), Expect = 4.7
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = -1
Query: 154 IWNVKLIVIEIV-VNLSIGGTNSCLLCSTMSLNILPEFRLWLPLIRFACTGS 2
I+ V +I +V +NLS C LC L I E R W+ + F T +
Sbjct: 518 IYEVAVIAFRVVSINLSDFCMKLCDLCRRSGLEIRRETRDWIKIENFNPTST 569
>Z81509-2|CAB04155.1| 239|Caenorhabditis elegans Hypothetical
protein F21A3.4 protein.
Length = 239
Score = 26.2 bits (55), Expect = 6.1
Identities = 18/53 (33%), Positives = 30/53 (56%)
Frame = -3
Query: 251 LADVRLGVVVRARPLVETIEHLREPHHQTVIPDMECKVDCNRDRSELEYRRNK 93
LA+ R+ +V R R E I++ R H Q + + K+DC+R+ + EY +K
Sbjct: 123 LAEKRV-IVQRMR---EEIDYRRHLHKQQL---KDLKLDCDREEEKCEYWNDK 168
>Z69302-6|CAL36504.1| 472|Caenorhabditis elegans Hypothetical
protein F40F8.11 protein.
Length = 472
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = -3
Query: 215 RPLVETIEHLREPHHQTVIPDMECKVDCNRDRSELEYRRNKQL 87
+P+VETIE + H + D+ + ++++ + E+R +K L
Sbjct: 286 KPIVETIEDAEKKSHSALAKDIIKAANISKEKVD-EWRNSKGL 327
>Z46794-2|CAA86774.1| 950|Caenorhabditis elegans Hypothetical
protein R06F6.2 protein.
Length = 950
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/49 (24%), Positives = 25/49 (51%)
Frame = -3
Query: 245 DVRLGVVVRARPLVETIEHLREPHHQTVIPDMECKVDCNRDRSELEYRR 99
D+ +G + +R + IE+ H + +IP +EC++ + S+ R
Sbjct: 580 DIFMGDMDASRVFLSYIENQTNEHDEFIIPILECQMRLFKVNSDWSQER 628
>AF036687-1|AAM75374.1| 173|Caenorhabditis elegans Hypothetical
protein C08G9.1 protein.
Length = 173
Score = 25.8 bits (54), Expect = 8.1
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -1
Query: 148 NVKLIVIEIVVNLSIGGTNSCLL 80
N LIV+ +++ LS+GG CL+
Sbjct: 142 NSSLIVLLVIIPLSVGGFAVCLI 164
>AC084152-2|AAM69073.2| 1571|Caenorhabditis elegans Hypothetical
protein Y102A11A.3 protein.
Length = 1571
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/48 (22%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = -1
Query: 307 ESHCAAAECVPNRVTYDVTSQMSASALSCV---RDHSSKRLNISGNHI 173
+ HCA + + +D++ ++ S C+ ++S K +++ NHI
Sbjct: 673 KEHCAHSNAITPETVFDISPELGKSKQHCIDKQAEYSGKLVHLK-NHI 719
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,324,313
Number of Sequences: 27780
Number of extensions: 115919
Number of successful extensions: 499
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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