Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32528
         (343 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    23   0.77 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   1.3  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   2.4  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    20   9.5  
S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               20   9.5  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    20   9.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    20   9.5  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    20   9.5  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 23.4 bits (48), Expect = 0.77
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -1

Query: 343 MSDSMKTSECMCESHCAAAECVPNRVTYDVTSQ 245
           ++D +++    CES+       P+ V  D+T+Q
Sbjct: 171 LTDCLRSELAQCESNIKVISISPDLVETDMTAQ 203


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
 Frame = -3

Query: 200 TIEHLREP-HHQTVIPDME 147
           TI HLR+P HH T I + +
Sbjct: 309 TITHLRDPDHHSTDIQNCD 327


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 296 RGGGVRAEPRHVRRHLADVRLGVVVRARPLVETIEH 189
           RGGG   + RH+ R  +     +     PL  TI+H
Sbjct: 262 RGGGTNTDARHLFRTASSTPEDLQDLEEPLT-TIQH 296


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 272 PRHVRRHLADVRLGVVV 222
           P HV  H A + +GV++
Sbjct: 262 PYHVSDHKAAITVGVIM 278


>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +2

Query: 68  HCRAQQAAVCSAYTQVH 118
           +C+A + A+C+   Q H
Sbjct: 29  NCKAPETALCARRCQQH 45


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 286 ECVPNRVTYDVTSQMS 239
           E +P RVT  VTS ++
Sbjct: 240 EAIPARVTLGVTSLLT 255


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 286 ECVPNRVTYDVTSQMSAS 233
           E  P RVT  VTS ++ S
Sbjct: 271 EAAPARVTLGVTSLLTLS 288


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +3

Query: 156 GYYGLMMWFPEMFNRFDEWSRTHDNAE 236
           G +   +W P+ F   D+ S  HD  E
Sbjct: 110 GDFAEKIWVPDTFFANDKNSFLHDVTE 136


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,206
Number of Sequences: 438
Number of extensions: 1525
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7839909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)