Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32520
         (342 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    22   1.8  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   1.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   9.5  

>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 112 TGKLYAVGSATPPSERRLSVPATTIQ 189
           +G+L+  GSA  P E+    P T  Q
Sbjct: 26  SGELFKAGSAEQPKEQEPLPPVTPPQ 51


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 121 LYAVGSATPPSERRLSVPATTIQ 189
           L+   S+TP   + L  P TTIQ
Sbjct: 273 LFRTASSTPEDLQDLEEPLTTIQ 295


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -2

Query: 269 VDPLLHHNCED 237
           +DPL   NC D
Sbjct: 422 IDPLAFRNCSD 432


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,784
Number of Sequences: 438
Number of extensions: 2057
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7839909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)