Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32519
         (715 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0168 - 12983476-12983780,12984180-12984684                       30   2.1  
06_02_0207 + 13017538-13017670,13019486-13019658,13020754-130208...    28   8.5  
01_01_0947 - 7450144-7450503,7450637-7451023,7451955-7452251           28   8.5  

>09_03_0168 - 12983476-12983780,12984180-12984684
          Length = 269

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = -1

Query: 352 DNRKENRRM*FYRLA*KSFIL--YSKFKLHYFLLHPEHWKYFMHYHFLIFFRTSPGLDQR 179
           D+++E+  + FY +  +  +     +F  H++   P+ W   +H      F  SP +DQR
Sbjct: 101 DDQEEDDTVFFYSITKRQLMSERVEEFNTHFYWTTPQGWLLMVHPESHKVFLWSPFIDQR 160

Query: 178 N*LNLRF 158
             +NL F
Sbjct: 161 --INLPF 165


>06_02_0207 +
           13017538-13017670,13019486-13019658,13020754-13020845,
           13022213-13022271,13022659-13022759,13023907-13023988,
           13024092-13024321
          Length = 289

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 497 FGAFFLMTIIINMNYLRIFEREFKME 420
           FG F L T ++ M+YL+ FE+   ++
Sbjct: 250 FGGFLLFTCVLLMDYLKEFEKNLLLQ 275


>01_01_0947 - 7450144-7450503,7450637-7451023,7451955-7452251
          Length = 347

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 26  KLRCKYSNLTVT*L*MYYFELKYECLCIFF-LNKPY 130
           +L CKY +L    +  YY ++K+E  C+F   N PY
Sbjct: 141 ELPCKYCSLGCPEIFPYYSKIKHEAQCMFRPYNCPY 176


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,603,484
Number of Sequences: 37544
Number of extensions: 264176
Number of successful extensions: 375
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)