Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32517
         (579 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    24   1.2  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   2.2  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    23   2.9  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   8.8  

>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 4/25 (16%)
 Frame = -2

Query: 224 FRC*TPPRPSHRFLRP----FRWPL 162
           FRC  PP P  RF+ P    FR PL
Sbjct: 148 FRCIGPPTPFPRFIPPNAYRFRPPL 172


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -3

Query: 574 LILVVCLGFSEQGL 533
           L+LVVCLG + QG+
Sbjct: 5   LLLVVCLGIACQGI 18


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +2

Query: 410 EVPKDTKLYSELLVTLIVXALXQLMEPTVTIRVRQTDXALVESLLGKAQ 556
           E+ K  K   E ++ +I  A    +EPT    +RQT    V  +L  A+
Sbjct: 162 EIQKXIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDAR 210


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 574 LILVVCLGFSEQGLHQSXVGLTHADGDSGFHEL 476
           L+LVVCLG + Q +  + V       ++  H +
Sbjct: 5   LLLVVCLGIACQDVTSAAVNHQRKSANNLAHSM 37


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,651
Number of Sequences: 438
Number of extensions: 2026
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)