Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32515
         (303 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz...    29   0.20 
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    27   0.61 
SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase Srk1|Schizo...    25   1.8  
SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein Rga5|Sch...    25   2.4  
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom...    25   3.2  
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    24   4.3  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    24   4.3  
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc...    24   5.6  
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13...    24   5.6  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    23   7.5  
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    23   9.9  
SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces ...    23   9.9  
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch...    23   9.9  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    23   9.9  

>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
           Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 504

 Score = 28.7 bits (61), Expect = 0.20
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +1

Query: 130 LPPDKIVLSSDIEALLGMGSSVILAGDLNCKHIRWNSHTTTPNG 261
           L P+K+     +E +   G   IL  D     + WNS T TP G
Sbjct: 212 LEPNKLDEGMFLEGIGAGGIGRILIADFGFSKVVWNSKTATPCG 255


>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 27.1 bits (57), Expect = 0.61
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +1

Query: 25  LHCVPLDPPALANIEASVCRISLTGHAPIVIASVYLPPDKIVLS 156
           L CV    P++   E  +C+ + TGH   +++    P  K ++S
Sbjct: 487 LQCVSNVAPSMYK-EGGICKQTFTGHKDFILSVTVSPDGKWIIS 529


>SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase
           Srk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 580

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = +1

Query: 136 PDKIVLSSDIEALLGMGSSVI---LAGDLNCKHIRWNSHTTTPNG 261
           PDK+    + E + G+G+  I      D     + W+SHT TP G
Sbjct: 284 PDKV---DEGEFIPGVGAGTIGRIRLADFGLSKVVWDSHTQTPCG 325


>SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein
           Rga5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 78  VPNLTDGTRADRYRVRL 128
           +PNLTD  R + YR R+
Sbjct: 155 IPNLTDNERVEMYRRRI 171


>SPBC32F12.02 |rec14||recombination protein
           Rec14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 91  LTGHAPIVIASVYLPPDKIVLSSDIE 168
           L GHA  + A  + P   ++LS+D+E
Sbjct: 225 LRGHAAWIFAVAFNPVGDLLLSADVE 250


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 169 PRYHCLERSYPVEDKRTR*RSAR 101
           PRY C+ R  P+E+     R+ R
Sbjct: 375 PRYACVHRDRPIEESLLEFRNMR 397


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +1

Query: 43   DPPALANIEASVCRISLTGHAPIVIASVYLPPDKIVLSSDIEALLGMGSS 192
            DP +  N E  +  + + GH PI+      P  +I LS +   +LG G S
Sbjct: 917  DPQSRHNDERHLYSVLIDGHCPIMENGKRRPKYRIRLSGN--PILGDGKS 964


>SPAC31A2.14 |||WD repeat protein, human WRDR48
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 231 PDVFTI*VARQNDRAPHTE 175
           PD F+I   +  +R PHTE
Sbjct: 633 PDYFSIPARQNRNRKPHTE 651


>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 777

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 10/43 (23%), Positives = 22/43 (51%)
 Frame = +1

Query: 61  NIEASVCRISLTGHAPIVIASVYLPPDKIVLSSDIEALLGMGS 189
           N++   C  +L GH   ++  +Y+     V+S+  + L+ + S
Sbjct: 535 NVDTQQCVQTLEGHTGAILKLIYISQGTQVVSAAADGLVKVWS 577


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -3

Query: 193 QSSPYRAAPRYHCLERSYPVEDKRTR*RSARVPSVRFG 80
           QSS +R        +  Y +ED+ T  +S+R P   FG
Sbjct: 542 QSSHFRIIEDLPDSKLKYSLEDQATYDQSSRYPGRHFG 579


>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = -3

Query: 58  RAREDRAGRNA 26
           +AREDR GRNA
Sbjct: 334 KAREDRMGRNA 344


>SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 400

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 190 SVILAGDLNCKHIRWNSHT 246
           S +LAG LN  ++ W  H+
Sbjct: 21  SPVLAGPLNFGYLSWGQHS 39


>SPCC320.10 |srp72||signal recognition particle subunit
           Srp72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 561

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = -1

Query: 210 VARQNDRAPHTEQRLDITA*NDLIRWK 130
           +A  ++RAP +  + D++  +DL++WK
Sbjct: 417 LAHLDERAPVSTIQDDMSVIDDLLQWK 443


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +3

Query: 192 CHSGGRPKL*THQVELTHHNPE 257
           CH G    L  H V  T+H P+
Sbjct: 232 CHVGPEQVLAVHDVSSTYHVPQ 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,170,964
Number of Sequences: 5004
Number of extensions: 20140
Number of successful extensions: 50
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)