Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32515
(303 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0630 - 19410852-19411235,19411370-19412257,19412440-194129... 27 2.8
09_03_0058 + 11950668-11950701,11951068-11951106,11951586-119519... 27 3.7
01_06_1027 + 33912773-33912816,33913245-33913401,33913492-339135... 27 3.7
05_01_0597 + 5363049-5363429,5363559-5363715,5364390-5364757 26 4.9
11_03_0162 - 10956997-10957323,10957390-10957568,10957823-109579... 26 6.5
06_02_0207 + 13017538-13017670,13019486-13019658,13020754-130208... 26 6.5
01_06_0083 + 26283492-26283756,26284255-26284467,26284620-262847... 26 6.5
12_01_0114 - 875714-876652 25 8.6
11_01_0108 - 837309-838247 25 8.6
02_01_0196 + 1331397-1331825 25 8.6
>10_08_0630 -
19410852-19411235,19411370-19412257,19412440-19412941,
19413662-19414135,19414982-19415040,19415468-19415629
Length = 822
Score = 27.1 bits (57), Expect = 2.8
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -3
Query: 112 RSARVPSVRFGTLMLRY*RAREDRAGRNAGLFY 14
RSA+ +F + Y R +E RAGRN G Y
Sbjct: 241 RSAKKCKEKFENVHKYYKRTKESRAGRNDGKTY 273
>09_03_0058 +
11950668-11950701,11951068-11951106,11951586-11951982,
11952016-11952314,11953743-11956795
Length = 1273
Score = 26.6 bits (56), Expect = 3.7
Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +1
Query: 85 ISLTGHAPIV-IASVYLPPDKIVLSSDIEALLGMGSSVILAGDLNCKHIRWNSHTT 249
I L+G I+ ++ ++PP + ++ ++ALL G ++ G++ +R H T
Sbjct: 170 IELSGPLEILSLSGAFMPPPSLANATGLKALLAGGQGQVIGGNV-VGALRARGHVT 224
>01_06_1027 +
33912773-33912816,33913245-33913401,33913492-33913589,
33913680-33913775,33914422-33914681,33914778-33915088,
33915154-33915297,33915452-33915589,33915674-33915721,
33916328-33916408,33916705-33916864,33917411-33917532
Length = 552
Score = 26.6 bits (56), Expect = 3.7
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 193 VILAGDLNCKHIRWNSHTTTPNGR 264
VIL GDLNC H + H N R
Sbjct: 440 VILTGDLNCAHQEIDIHDPAGNRR 463
>05_01_0597 + 5363049-5363429,5363559-5363715,5364390-5364757
Length = 301
Score = 26.2 bits (55), Expect = 4.9
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +1
Query: 49 PALANIEASVCRISLTGHAPIVIASVYLPPDKIVLSSDIEALLGMGS 189
P N+ AS SL G API +A ++ ALLG G+
Sbjct: 64 PFAVNLAASAAFFSLLGAAPISVAVPVTNATTFAATAVAAALLGEGT 110
>11_03_0162 -
10956997-10957323,10957390-10957568,10957823-10957922,
10959333-10959397,10959480-10959572,10961062-10961607,
10961627-10961678,10961753-10961884,10963049-10963210,
10963532-10963582
Length = 568
Score = 25.8 bits (54), Expect = 6.5
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +1
Query: 49 PALANIEASVCRISLTGHAPIVIASVYLPPDKIVLSSDIEALLGMGSSVILAG 207
P +A ++A+ + GH+ + ++ L P K VLS + A G+ V LAG
Sbjct: 35 PEIAQVDANHNMLMKVGHSSGQVKAIPLEPLKKVLSK-LHAEKHKGTEVNLAG 86
>06_02_0207 +
13017538-13017670,13019486-13019658,13020754-13020845,
13022213-13022271,13022659-13022759,13023907-13023988,
13024092-13024321
Length = 289
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +2
Query: 221 NTSGGTHTPQPRMAGGLTR*SMISPSI 301
+T G TPQP GG SPSI
Sbjct: 32 HTEGNLSTPQPEQCGGRREMIWASPSI 58
>01_06_0083 +
26283492-26283756,26284255-26284467,26284620-26284771,
26284884-26285157,26285277-26285485
Length = 370
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +1
Query: 100 HAPIVIASVYLPPDKIVLSSDIEALLGMGSSVIL 201
H P +A ++P +SS ++ L+G+G+ I+
Sbjct: 188 HKPREVAYQFIPDVVASISSTVQELIGLGARTIM 221
>12_01_0114 - 875714-876652
Length = 312
Score = 25.4 bits (53), Expect = 8.6
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 49 PALANIEAS-VCRISLTGHAPIVIASVYLPPDKI 147
P ++EAS VC GH IV+ S +PP +
Sbjct: 183 PQFRDLEASNVCSTYRRGHFSIVVNSSAIPPGPV 216
>11_01_0108 - 837309-838247
Length = 312
Score = 25.4 bits (53), Expect = 8.6
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 49 PALANIEAS-VCRISLTGHAPIVIASVYLPPDKI 147
P ++EAS VC GH IV+ S +PP +
Sbjct: 183 PQFRDLEASNVCSTYRRGHFSIVVNSSAIPPGPV 216
>02_01_0196 + 1331397-1331825
Length = 142
Score = 25.4 bits (53), Expect = 8.6
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -3
Query: 298 RRRDHRLTRQAACHSGLWCVSST*CVYNLGRPPE*QSSPYRAAP 167
RR R+ R A C + V+ GR PE +SSP + P
Sbjct: 67 RRYAERIYRYAGCSPACFVVARVYLDRLAGRSPEEESSPSPSPP 110
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,709,180
Number of Sequences: 37544
Number of extensions: 171135
Number of successful extensions: 314
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 314
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 351703996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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