Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32514
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|...    33   0.023
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    26   3.5  
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch...    26   4.6  
SPAC29E6.05c ||SPAC30.09c|peptide methionine sulfoxide reductase...    25   6.1  
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||...    25   8.0  
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    25   8.0  
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    25   8.0  

>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 33.5 bits (73), Expect = 0.023
 Identities = 26/101 (25%), Positives = 48/101 (47%)
 Frame = +1

Query: 64  KPIDAFRDYSVDDTDPIKERVRRTYYLMHSNVTVDLVKQKREKWLKFNHFKATVKDALIK 243
           K +  F +YSV+D D  +ER R+    +   + V+   + R++W +F   K+ ++    +
Sbjct: 217 KMVANFEEYSVEDVDKRRERNRK----LSEPLLVNGRYRVRDRWAQFR--KSEIEKP-YR 269

Query: 244 LNELVDESDPDTDLPNIVHAFQTAERIREDHPDEDWFHLTG 366
                DE      LP+ +H+ +  E + +    ED FH  G
Sbjct: 270 FTFFTDE------LPSTIHSHEMWELVHDGQSFEDLFHSGG 304


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
            polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 100  DTDPIKERVRRTYYLMHSNVTVDLVKQKREKWLK 201
            D D +   +R  + L+HSN  ++ +KQ+ E+  K
Sbjct: 1035 DVDQMNSLLREAFVLLHSNNIMERLKQEFEERYK 1068


>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 667

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = -3

Query: 576 ISKLSIPQ-WGLYIPYLVLYL-GIISVRVVLEALGTIDDRVSPFTTNG 439
           +SK  +PQ   + +  L+ ++ GII++   L  LG +D  VSP    G
Sbjct: 151 LSKADVPQETAILVTGLIAFIAGIINLAAGLFRLGFLDALVSPVLLRG 198


>SPAC29E6.05c ||SPAC30.09c|peptide methionine sulfoxide reductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 170

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 15/45 (33%), Positives = 18/45 (40%)
 Frame = +1

Query: 409 PQWCVVGDTFPVGCKWADSIVYGPESFKDNPDTYNA*VQHQIWNV 543
           P   +V    P G KW D+  Y     + NPD Y        WNV
Sbjct: 125 PNKKIVTQILPAG-KWWDAEDYHQLYLEKNPDGYRCSSHFLRWNV 168


>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +1

Query: 118 ERVRRTYYLMHSNVTVDLVKQKREKWLKFNHFKATVKDALIKLNELVDESDPDTDLPNI 294
           ER  R Y L   N+  D   + R+     N +KA VK   +   ++ +E + D D+P I
Sbjct: 431 ERQERDYELFLQNLEED--PELRQG---VNLYKAPVKAIAVADTDMDEEDEVDEDIPQI 484


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +1

Query: 319 RIRED-HPDEDWFHLTGLIHDLGKVMAFYDEPQWCVVGDTFPVGCK 453
           R+ +D   D D F    L   +GK +++Y     C+V   FP+G K
Sbjct: 514 RLPDDMQQDLDCFEKFYLSKQVGKKISWYASLGHCIVKARFPLGNK 559


>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 612

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 289 NIVHAFQTAERIREDHPDEDWFHLTG 366
           NI+ + +TAE IR   PD+  FH+ G
Sbjct: 179 NILRSDKTAEEIRSVPPDQ-LFHIAG 203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,464,920
Number of Sequences: 5004
Number of extensions: 49697
Number of successful extensions: 155
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)