Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32514
(578 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF038609-3|AAU87825.1| 193|Caenorhabditis elegans Hypothetical ... 180 9e-46
Z95391-1|CAB08739.1| 360|Caenorhabditis elegans Hypothetical pr... 29 1.8
L23651-7|AAM22042.1| 926|Caenorhabditis elegans Associated with... 29 2.4
L23651-6|AAK84496.3| 960|Caenorhabditis elegans Associated with... 29 2.4
Z66500-12|CAA91308.1| 549|Caenorhabditis elegans Hypothetical p... 29 3.2
U07941-1|AAB05072.1| 549|Caenorhabditis elegans CCT-1 protein. 29 3.2
AL021497-12|CAA16402.2| 1222|Caenorhabditis elegans Hypothetical... 28 4.2
Z81464-7|CAB03857.2| 338|Caenorhabditis elegans Hypothetical pr... 28 5.5
>AF038609-3|AAU87825.1| 193|Caenorhabditis elegans Hypothetical
protein C54E4.5 protein.
Length = 193
Score = 180 bits (437), Expect = 9e-46
Identities = 81/156 (51%), Positives = 102/156 (65%)
Frame = +1
Query: 79 FRDYSVDDTDPIKERVRRTYYLMHSNVTVDLVKQKREKWLKFNHFKATVKDALIKLNELV 258
+R Y V DPI+ RVR Y+ H TVD VK+ +KWLKF+H K + L L +
Sbjct: 16 YRIYDVKAEDPIQVRVRTHYFTQHQKQTVDFVKEMHQKWLKFDHAKMPILGCLDMLATFL 75
Query: 259 DESDPDTDLPNIVHAFQTAERIREDHPDEDWFHLTGLIHDLGKVMAFYDEPQWCVVGDTF 438
DESDPD D N++HA+QTAE+IRE+HPD+ W HL GLIHDLGK+M+ + E QW V GDT+
Sbjct: 76 DESDPDVDEANLIHAYQTAEKIRENHPDKPWMHLAGLIHDLGKIMSVWGEEQWAVTGDTY 135
Query: 439 PVGCKWADSIVYGPESFKDNPDTYNA*VQHQIWNVQ 546
PVGC A SIVYG SF NPD + H ++ Q
Sbjct: 136 PVGCAPAASIVYGKSSFDGNPD-----ISHPVYGTQ 166
Score = 32.7 bits (71), Expect = 0.19
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +2
Query: 515 PKYNTKYGMYKPHCGIDNLLM 577
P Y T+ GMY+ CG++NLLM
Sbjct: 161 PVYGTQMGMYQEKCGMENLLM 181
>Z95391-1|CAB08739.1| 360|Caenorhabditis elegans Hypothetical
protein H09F14.1 protein.
Length = 360
Score = 29.5 bits (63), Expect = 1.8
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +2
Query: 404 TSRSGAWSETL--SPLVVNGLTLSSMVPRASRTTLTLIMPKYNTKYGMYKPHCGIDNLL 574
+S SG W+ L PLV L P + T L + YNT + MY + ID L+
Sbjct: 211 SSSSGTWTRILWVMPLVFVVLNTPFYSPPSGDTRSELFVTVYNTAHYMYYMNTAIDVLV 269
>L23651-7|AAM22042.1| 926|Caenorhabditis elegans Associated with
ran (nuclear import/export) function protein 2, isoform
b protein.
Length = 926
Score = 29.1 bits (62), Expect = 2.4
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +1
Query: 73 DAFRDYSVDDTDPIKERVRRTYYLMHSNVTVDLVKQKREKWLKFNHFKATVKDAL-IKLN 249
DA +Y +D +P R + YL + +T + K +KW KF+ T K L I N
Sbjct: 669 DAGCNYIIDHLNPQHHRHLKNVYLCGNELTPPVAKLLIQKWSKFDGL--TPKPVLHIHTN 726
Query: 250 ELVDE 264
DE
Sbjct: 727 SFGDE 731
>L23651-6|AAK84496.3| 960|Caenorhabditis elegans Associated with
ran (nuclear import/export) function protein 2, isoform
a protein.
Length = 960
Score = 29.1 bits (62), Expect = 2.4
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +1
Query: 73 DAFRDYSVDDTDPIKERVRRTYYLMHSNVTVDLVKQKREKWLKFNHFKATVKDAL-IKLN 249
DA +Y +D +P R + YL + +T + K +KW KF+ T K L I N
Sbjct: 706 DAGCNYIIDHLNPQHHRHLKNVYLCGNELTPPVAKLLIQKWSKFDGL--TPKPVLHIHTN 763
Query: 250 ELVDE 264
DE
Sbjct: 764 SFGDE 768
>Z66500-12|CAA91308.1| 549|Caenorhabditis elegans Hypothetical
protein T05C12.7 protein.
Length = 549
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/63 (25%), Positives = 32/63 (50%)
Frame = +1
Query: 166 DLVKQKREKWLKFNHFKATVKDALIKLNELVDESDPDTDLPNIVHAFQTAERIREDHPDE 345
+LVKQK N ++ K+A+ ++E + + ++V+A +T+ + PD
Sbjct: 110 ELVKQKVHPTTIINGYRLACKEAVKYISENISFTSDSIGRQSVVNAAKTSMSSKIIGPDA 169
Query: 346 DWF 354
D+F
Sbjct: 170 DFF 172
>U07941-1|AAB05072.1| 549|Caenorhabditis elegans CCT-1 protein.
Length = 549
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/63 (25%), Positives = 32/63 (50%)
Frame = +1
Query: 166 DLVKQKREKWLKFNHFKATVKDALIKLNELVDESDPDTDLPNIVHAFQTAERIREDHPDE 345
+LVKQK N ++ K+A+ ++E + + ++V+A +T+ + PD
Sbjct: 110 ELVKQKVHPTTIINGYRLACKEAVKYISENISFTSDSIGRQSVVNAAKTSMSSKIIGPDA 169
Query: 346 DWF 354
D+F
Sbjct: 170 DFF 172
>AL021497-12|CAA16402.2| 1222|Caenorhabditis elegans Hypothetical
protein Y51A2D.15 protein.
Length = 1222
Score = 28.3 bits (60), Expect = 4.2
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Frame = +1
Query: 94 VDDTDPIKERVRRTYYLMHS--NVTVDLVKQKREKWLKFNHFKATVKDALIKLNELVDES 267
V D + +RR + H+ N +L KQ +K + N + + +AL +LN +E
Sbjct: 971 VQTRDELSLELRRAHDTCHNKNNQIDELKKQLNQKISEVNKLSSKI-EALSQLNRTYNEE 1029
Query: 268 DPDTDLPNIVHAFQTAERIREDHPDEDWFHL 360
+ + + Q E ++ D+D +HL
Sbjct: 1030 NRNLSRQLEILLTQNKELLQRALHDKDQYHL 1060
>Z81464-7|CAB03857.2| 338|Caenorhabditis elegans Hypothetical
protein C08E8.2 protein.
Length = 338
Score = 27.9 bits (59), Expect = 5.5
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = +1
Query: 10 VSMIDPSQLLRPEPTF---NDKPIDAFRDYSVDDTDPIKE 120
V +ID S LRP+ T KPID FR ++D D I E
Sbjct: 94 VFIIDFSDELRPKSTQILDASKPIDGFRPNFLNDLDVISE 133
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,797,902
Number of Sequences: 27780
Number of extensions: 286169
Number of successful extensions: 793
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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