Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32514
         (578 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    23   1.6  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   2.2  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   3.8  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   8.8  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 395 HFMTSRSGAWSETLSPLVVNGLTLSSMVPRASR 493
           +F     G +  +LSP+ VNG       P +SR
Sbjct: 250 NFQWGEEGIFGMSLSPIAVNGYRTLFFHPLSSR 282


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 216 GHSEGCSHQTQ*AGGRVRPRHGPTKHR 296
           G+S+  +HQ Q   G    + G T+H+
Sbjct: 799 GNSQSLAHQDQCCPGFTMTKSGKTRHQ 825


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -3

Query: 537 PYLVLYLGIISVRVVLEALGTIDDRVSPFTTNGESVSD 424
           P  V Y   +  + +LE    + D   P   NG++V+D
Sbjct: 99  PEAVSYNVAVPTKSILEKKPELVDATDPGEHNGDTVTD 136


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +2

Query: 440 PLVVNGLTLSSMVPRASRTTLTLIMPKYNT 529
           P+++NG  L +     S  T    +P  NT
Sbjct: 228 PIIMNGRDLMACAQTGSGKTAAFAVPIINT 257


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,060
Number of Sequences: 438
Number of extensions: 3472
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)