Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32513
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c...    30   0.40 
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo...    27   2.8  
SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces pom...    26   4.9  

>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 547

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +2

Query: 113 SWIRPWSECGCSELVSLQAYLENVRVLDRFTST--QRPHSLFWVLPLELEGSP 265
           S+  P +E     ++ L  YL+N  +LDR +ST    P+S+F   P E    P
Sbjct: 141 SFFSPHTERLVGRVLRLNRYLQNSELLDRNSSTFGSNPNSVFSAQPTEPSVEP 193


>SPAC7D4.06c |alg3||dolichol-P-Man dependent
           alpha|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 406

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 198 VLLLRNVLIVCFGCYHWNSKDR 263
           +L L   L+V F C HWN   R
Sbjct: 271 ILFLHVALLVAFTCKHWNKLSR 292


>SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 356 LSHKALRALIVTLR*FQCRNNRSIPRTRIVGAIL 255
           LSHK LR   ++ R   CRN   I   R+ G ++
Sbjct: 226 LSHKTLREYSLSNRVDTCRNQFRISVRRVAGGVV 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,896,980
Number of Sequences: 5004
Number of extensions: 57270
Number of successful extensions: 110
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)