Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32506
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    30   0.23 
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    29   0.41 
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    28   1.3  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    26   5.1  
SPBC16E9.15 |||heat shock factor binding protein |Schizosaccharo...    25   6.7  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    25   6.7  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   6.7  

>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +2

Query: 437 TRVTARLSSFALMSASILPKRSLLRLSTTNY-WSTPNTRRNLIRNLCTENTTGEFLLP 607
           T+V++R+ +F L   S++       ++   Y  +T  +R  LI+ LCT   T  FL+P
Sbjct: 439 TQVSSRVDNFLLKLPSMVSLELTNEMALEFYDLNTKASRNRLIKALCTIPRTSSFLVP 496


>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 29.5 bits (63), Expect = 0.41
 Identities = 18/69 (26%), Positives = 30/69 (43%)
 Frame = +1

Query: 412 SLNSPLIQDEGDGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNR 591
           +L SP    + D  T+K   ++ + T  ++ +   DN L  H K  E   T    +EY+ 
Sbjct: 333 NLRSPKSSGKADNLTIKSSSNIDKVTSNDLYL---DNNLQSHFKVTESQPTNLGRKEYSN 389

Query: 592 GVFVAQGNK 618
             F  +  K
Sbjct: 390 SPFSIRARK 398


>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +1

Query: 205 GDFSVIDTEFSS-IRERFDAEMRKMEEEMSK 294
           G F+ +D+E    IRE  +AE++KMEE+  K
Sbjct: 468 GVFTRVDSELGRRIREATEAEVKKMEEKAPK 498


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
 Frame = +2

Query: 296 SDQNS*TEKATISSRAQLARRHLHSIVTADSLP-SPVTGIA*TRRSFKTRVTARLSSFAL 472
           S  NS T  AT +S   L+  +  +  +A S P S V     T  S  T +T+ ++S   
Sbjct: 426 SSANSTT--ATSASSTPLSSVNSTTATSASSTPLSSVNSTTATSAS-STPLTS-VNSTTA 481

Query: 473 MSASILPKRSLLRLSTTNYWSTPNTRRNLIRNLCTENTTGEF 598
            SAS  P  S+   S T+  STP T  N   +    +T   +
Sbjct: 482 TSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSY 523


>SPBC16E9.15 |||heat shock factor binding protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 75

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 205 GDFSVIDTEFSSIRERFDAEMRKMEEEMSKFRSELMNRESN 327
           GDF  +  +FS   E     + ++EE M     E MN++S+
Sbjct: 31  GDFETLQKQFSEKLETMSTRLDQLEESM----REAMNKKSS 67


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 409 DSLNSPLIQDEGDGKTLKLRFDVSQYTPEEIVVKTVDNK 525
           +S+ SP +  EG   +LK R   +  TP+  +  T+D K
Sbjct: 554 NSITSPGVLPEGMAASLKKRTTNTAATPQAALPTTLDTK 592


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 186  KYPHQAWRFFGYRY 227
            +YP  AW+FF  RY
Sbjct: 1511 RYPEDAWKFFMVRY 1524


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,210,654
Number of Sequences: 5004
Number of extensions: 39449
Number of successful extensions: 136
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)