Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32500
         (559 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    26   4.3  
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    25   5.7  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    25   7.5  
SPCC1020.11c |||DUF786 family protein|Schizosaccharomyces pombe|...    25   7.5  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    25   7.5  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    25   10.0 

>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 143 PHAHMHTRTLLWITDFCV 196
           P+ H+ TR   WI  FC+
Sbjct: 66  PYCHIDTRAKFWICPFCL 83


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = -2

Query: 354 PILIAVIRNLNAKFCGEQITKLILSSFAYIGFSLWNIYT--FFQV 226
           P++  V + +N  F G      I+SSFA+IGF+L+   +  FF+V
Sbjct: 352 PLIDIVEKFMNVYFKG---LSNIISSFAFIGFTLFATLSSLFFKV 393


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1374

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 40   LFVGSLSGRTHTAARGHFTH 99
            LF+ SL   THT A+G   H
Sbjct: 1245 LFLNSLGDATHTKAKGDIEH 1264


>SPCC1020.11c |||DUF786 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 102

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -2

Query: 357 NPILIAVIRNLNAKFCGEQITKLILSSFAYIGFSLWNIYTFF 232
           NP +++ +RNL + F G      IL   +Y G +L+ +  FF
Sbjct: 2   NPKVVSFVRNLTSSFFG--CAAGILGLTSYEGLALYVLGYFF 41


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -1

Query: 358  KSDTYRRYKEPQRKILRGT--NHQTYFKFICIHRF 260
            K  T   Y E   K+LR    +HQ YF  +C++ F
Sbjct: 1204 KMRTALNYMERVVKLLRALKISHQLYFMPLCVYNF 1238


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 24  CVARTAVCWLAQWSHAHSGARTLHSLV 104
           CV R   C L+ WS  H     LHS+V
Sbjct: 153 CVLR---CCLSNWSWTHRAMFILHSMV 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,364,863
Number of Sequences: 5004
Number of extensions: 48462
Number of successful extensions: 132
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)