Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32500
         (559 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0662 + 5714108-5714147,5714336-5715669,5716482-5716673,571...    32   0.27 
07_03_0590 + 19786960-19787136,19787198-19787272,19787676-197881...    29   3.3  
01_05_0812 + 25444351-25444658,25444967-25445231,25445303-254453...    29   3.3  
01_03_0200 + 13744735-13745037,13745071-13745610,13745704-137458...    28   5.8  
05_05_0045 + 21830291-21830343,21830446-21830541,21830620-218306...    27   7.7  
04_03_0540 + 16929782-16929834,16929937-16930032,16930111-169301...    27   7.7  
01_06_1350 + 36505926-36505978,36506081-36506176,36506255-365063...    27   7.7  

>08_01_0662 +
           5714108-5714147,5714336-5715669,5716482-5716673,
           5716769-5716958,5717398-5717477
          Length = 611

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +1

Query: 118 IKRLTSRRSPRAHAHTHAPMDY*FLCVYKPTSVMLRHLKKC 240
           ++ L+S RS    AH+   + Y F CVY    VM+R L++C
Sbjct: 441 LRSLSSARSLELLAHSGESIKY-FACVYTAKVVMVRELRRC 480


>07_03_0590 +
           19786960-19787136,19787198-19787272,19787676-19788173,
           19788605-19788970,19788995-19789009
          Length = 376

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = -2

Query: 174 RSVRVCMCAWGPSRSKPFNVRTSTQVSEVSARRCVRATTERANKQLFGPHTN 19
           R  + C C +G S +     +T T +   +A RC +   E    +LFG H N
Sbjct: 111 RYFKNCGC-YGMSWNLTITAQTLTCMVSFNALRCAKVVLEGRAPELFGMHAN 161


>01_05_0812 +
           25444351-25444658,25444967-25445231,25445303-25445384,
           25446139-25446212,25446308-25446368,25446482-25446624
          Length = 310

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 408 LKLIALEHLNKTMVSWKTIV 467
           LKL  L+H+NK + SW T++
Sbjct: 120 LKLTVLQHMNKGIFSWATLI 139


>01_03_0200 +
           13744735-13745037,13745071-13745610,13745704-13745862,
           13748992-13749123,13749282-13749472,13749541-13749792,
           13750248-13750323,13750411-13750602,13750688-13750689,
           13753230-13753287,13753736-13754941
          Length = 1036

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 159 THARSYGLLISVCLQAYVSNVTSPEKMCKCSIMKNL 266
           T  ++YG + S+    +V   T PE+M K  +M NL
Sbjct: 31  TPFKTYGKITSLQWDEFVKFKTLPEEMAKSKLMSNL 66


>05_05_0045 +
           21830291-21830343,21830446-21830541,21830620-21830694,
           21831329-21831403,21831497-21831719,21831813-21832056,
           21832621-21832769,21832913-21832944,21832991-21833078,
           21833157-21833438,21833542-21834243
          Length = 672

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/35 (31%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -2

Query: 480 DYYCT-RLFSMKPLFCSNVLKLLILKYLCKTKERY 379
           ++ C  ++F  K + CS++L++L+   L +  ERY
Sbjct: 419 EFSCVCKMFEHKGILCSHILRVLVQYGLSRIPERY 453


>04_03_0540 +
           16929782-16929834,16929937-16930032,16930111-16930185,
           16930819-16930893,16930987-16931209,16931303-16931546,
           16932111-16932568,16932647-16932928,16933032-16933733
          Length = 735

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/35 (31%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -2

Query: 480 DYYCT-RLFSMKPLFCSNVLKLLILKYLCKTKERY 379
           ++ C  ++F  K + CS++L++L+   L +  ERY
Sbjct: 482 EFSCVCKMFEHKGILCSHILRVLVQYGLSRIPERY 516


>01_06_1350 +
           36505926-36505978,36506081-36506176,36506255-36506329,
           36506964-36507038,36507132-36507348,36507442-36507685,
           36508250-36508707,36508786-36509067,36509171-36509872
          Length = 733

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/35 (31%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -2

Query: 480 DYYCT-RLFSMKPLFCSNVLKLLILKYLCKTKERY 379
           ++ C  ++F  K + CS++L++L+   L +  ERY
Sbjct: 480 EFSCVCKMFEHKGILCSHILRVLVQYGLSRIPERY 514


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,215,412
Number of Sequences: 37544
Number of extensions: 280800
Number of successful extensions: 638
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)