Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32494
         (783 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    27   3.0  
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    26   5.3  
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos...    26   5.3  
SPBC3D6.05 |ptp4||phosphatidate cytidylyltransferase Ptp4 |Schiz...    25   9.3  
SPBPB2B2.07c |||S. pombe specific DUF999 protein family 7|Schizo...    25   9.3  

>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +2

Query: 635  LAFFIIISLYFSQISLTHTLTLPFHALSIGS 727
            L+ +II+ ++  + SLTH+  LP   + +GS
Sbjct: 2191 LSMWIIMLMFLGRKSLTHSWLLPVFGVGLGS 2221


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +2

Query: 149 VRSITNRTNK*FYLYFVPFLNTGQDFRAIRAIKI-IV*LTVLHSCTNFLISGRYVLKS 319
           + SI N ++  F+L    F  T +DF  I  +K+ +  +  L+ C +  ++ +Y  +S
Sbjct: 295 IESIEN-SHPVFFLVLYDFATTSEDFSIIERLKLQLAGVAPLYICNSKALANKYGAQS 351


>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -1

Query: 177 LLVRFVIERTGS*TTFNFKLVFFSFQKQFSARKCF*LIASIVYRTV 40
           L +RF +  TG   +   K+V +S    F++ KCF   A I  R V
Sbjct: 296 LFLRFFLSWTGKNISETQKIVAYSHLYSFTSVKCFVHWAQITRRKV 341


>SPBC3D6.05 |ptp4||phosphatidate cytidylyltransferase Ptp4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 218

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -1

Query: 597 VSINF*LFIK*FGKYVGWLRTERMERAWNGVL 502
           +  N+  F + + + +G L  E  + AWNGV+
Sbjct: 59  IRFNWPAFSRLYNRVIGPLMRESEKNAWNGVI 90


>SPBPB2B2.07c |||S. pombe specific DUF999 protein family
           7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 165

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -1

Query: 366 LYVCMFVCLLYNVICI 319
           +Y+C+F+ LL  +IC+
Sbjct: 146 IYICLFILLLLGLICM 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,928,786
Number of Sequences: 5004
Number of extensions: 57125
Number of successful extensions: 117
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)