Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32494
         (783 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003385-7|AAB54247.1|  381|Caenorhabditis elegans Serpentine re...    29   2.8  
U42436-1|AAF99891.1|  305|Caenorhabditis elegans Hypothetical pr...    29   5.0  
AF067608-13|AAK95862.1| 1634|Caenorhabditis elegans Hypothetical...    28   6.6  
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t...    28   8.7  
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t...    28   8.7  
AF045640-7|AAU05589.1|  978|Caenorhabditis elegans Novel channel...    28   8.7  
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel...    28   8.7  
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel...    28   8.7  
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel...    28   8.7  

>AF003385-7|AAB54247.1|  381|Caenorhabditis elegans Serpentine
           receptor, class w protein7 protein.
          Length = 381

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 488 SHSHLNTPFHALSIRSVLNHPTYLPNYLINN*KFIDTF 601
           S   L T    ++     N P+Y+P  L+NN K +D F
Sbjct: 191 SFQFLQTSIEKVTKYCTYNRPSYVPYLLLNNEKLVDKF 228


>U42436-1|AAF99891.1|  305|Caenorhabditis elegans Hypothetical
           protein C49H3.8 protein.
          Length = 305

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -3

Query: 484 IC-KKERNNNKTKWQHGEVDESSNI*KMCLYFFYNNN 377
           IC  KER  N TKW+  E  E  +I  +C    + NN
Sbjct: 122 ICLDKERAENWTKWEASEEGEKPDIETLCKERLFPNN 158


>AF067608-13|AAK95862.1| 1634|Caenorhabditis elegans Hypothetical
           protein B0511.12 protein.
          Length = 1634

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
 Frame = +2

Query: 374 LIVIIKKI*THFLDIAAFIDLAMLPFCFIIIS--LFLTNFSHSHLNTPFHALSIRSVLNH 547
           L  I+  +    +D   F D +++ FCF++ S    L        ++P H  +  +  N 
Sbjct: 206 LATIVALLAVLLIDARIFYDYSLVAFCFVVASAQFSLLKSVQPDASSPIHGFNWVASYNR 265

Query: 548 PTY 556
           P Y
Sbjct: 266 PIY 268


>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1797

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 4   LYFVGLMSYVNLHCTINYRCYQLKAFSRRELF 99
           L+ VG     N+ C I   CY  + F RR +F
Sbjct: 436 LFEVGFTILFNVECIIKILCYGFRNFIRRGIF 467


>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1831

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 4   LYFVGLMSYVNLHCTINYRCYQLKAFSRRELF 99
           L+ VG     N+ C I   CY  + F RR +F
Sbjct: 436 LFEVGFTILFNVECIIKILCYGFRNFIRRGIF 467


>AF045640-7|AAU05589.1|  978|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           b protein.
          Length = 978

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 4   LYFVGLMSYVNLHCTINYRCYQLKAFSRRELF 99
           L+ VG     N+ C I   CY  + F RR +F
Sbjct: 494 LFEVGFTILFNVECIIKILCYGFRNFIRRGIF 525


>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           a protein.
          Length = 1562

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 4   LYFVGLMSYVNLHCTINYRCYQLKAFSRRELF 99
           L+ VG     N+ C I   CY  + F RR +F
Sbjct: 494 LFEVGFTILFNVECIIKILCYGFRNFIRRGIF 525


>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           c protein.
          Length = 1913

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 4   LYFVGLMSYVNLHCTINYRCYQLKAFSRRELF 99
           L+ VG     N+ C I   CY  + F RR +F
Sbjct: 540 LFEVGFTILFNVECIIKILCYGFRNFIRRGIF 571


>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           d protein.
          Length = 1861

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 4   LYFVGLMSYVNLHCTINYRCYQLKAFSRRELF 99
           L+ VG     N+ C I   CY  + F RR +F
Sbjct: 466 LFEVGFTILFNVECIIKILCYGFRNFIRRGIF 497


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,960,303
Number of Sequences: 27780
Number of extensions: 311650
Number of successful extensions: 726
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)