Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32487
         (543 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    25   5.5  
SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces po...    25   9.5  

>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 356 DGSSVGSNGDVK*RLPFFFLLVVGL 282
           +  SVG+N D+K  LP F ++V+ +
Sbjct: 695 ENRSVGANSDIKVSLPTFRMVVLSI 719


>SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 412

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
 Frame = +1

Query: 22  APINTAVNSVTKPKPAGTDDGFKGEGAA--CGTSVV---KVAHQMISSRSPRGFTVASPS 186
           AP N+AV  +      GT+   K         T VV   +V+ Q ISSR    F    PS
Sbjct: 148 APFNSAVEKLLVIVYEGTEKSEKAVADLNDSSTDVVPESEVSFQTISSRVDNFFAAPLPS 207

Query: 187 EDA 195
           E A
Sbjct: 208 EQA 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.310    0.126    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,027,423
Number of Sequences: 5004
Number of extensions: 35342
Number of successful extensions: 86
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)