Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32487
(543 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0577 + 4261249-4262055,4262149-4262203,4262293-4262468,426... 31 0.59
02_01_0244 + 1603381-1603792,1604054-1604132,1604993-1605862,160... 31 0.79
05_07_0141 - 27985539-27985609,27985692-27985749,27986249-279862... 29 1.8
06_03_1348 - 29497084-29497384,29497464-29497634,29497717-294985... 29 2.4
06_01_1148 + 9629630-9629759,9629848-9630581,9630660-9631121,963... 29 2.4
05_07_0218 + 28470325-28470454,28470543-28471276,28471355-284718... 29 2.4
02_05_0268 - 27302734-27303034,27303114-27303284,27303367-273041... 29 2.4
01_02_0132 + 11444480-11444609,11444698-11445131,11445210-114454... 29 2.4
10_08_0965 + 21915842-21916906 29 3.2
04_04_0858 + 28800691-28801155,28801293-28801515,28802555-28803048 28 4.2
12_02_0472 - 19469512-19469541,19469755-19469785,19469975-19471356 28 5.5
02_02_0509 - 11064209-11064470,11065945-11066132,11066249-110664... 28 5.5
09_03_0196 + 13374054-13374456,13375145-13375707,13375935-133759... 27 7.3
08_02_0844 + 21798076-21798618 27 7.3
04_03_0472 - 16316440-16316740,16317046-16317614 27 7.3
07_01_0344 - 2490700-2493249 27 9.7
06_03_1347 - 29492460-29494685 27 9.7
03_01_0151 + 1206555-1206998,1207112-1207543 27 9.7
01_06_0680 + 31132683-31133499,31133597-31134717,31134811-31135713 27 9.7
>03_01_0577 +
4261249-4262055,4262149-4262203,4262293-4262468,
4262554-4262718,4262811-4263178,4263225-4263861,
4263952-4265844,4266325-4266672
Length = 1482
Score = 31.1 bits (67), Expect = 0.59
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = +1
Query: 103 ACGTSVVKVAHQMISSRSPRGFTVASPSEDATAPDPQHYNLMARRGSKS 249
A G +VV +AH++ + R+ T+A A +H +LMARRG S
Sbjct: 790 AAGRTVVVIAHRLATVRNAD--TIAVLDRGAVVESGRHADLMARRGPYS 836
>02_01_0244 +
1603381-1603792,1604054-1604132,1604993-1605862,
1606019-1606276,1606675-1606834
Length = 592
Score = 30.7 bits (66), Expect = 0.79
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 345 RRPV*PIVVIDSSAWLQEGACYFN 416
+RP+ IV++ S AWL G CY N
Sbjct: 486 KRPILQIVLLSSKAWLFSGYCYEN 509
>05_07_0141 -
27985539-27985609,27985692-27985749,27986249-27986296,
27986455-27986517,27986599-27986722,27990021-27990358
Length = 233
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +1
Query: 82 GFKGEGAACGTSVVKVAHQMISSRSPRGFTVASPSEDAT 198
GF+ G A G VV +M + S G+ PS+D T
Sbjct: 85 GFRRAGVAVGEGVVGARRRMRGAASTVGYMSGKPSDDTT 123
>06_03_1348 -
29497084-29497384,29497464-29497634,29497717-29498549,
29498631-29499092,29499171-29499904,29499993-29500122
Length = 876
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 526 DFRVLCSSEPDRGSRLTPPSCPLAISVP 443
D V + P R + LTPP C L+I P
Sbjct: 526 DIVVKMTPHPSRPTELTPPKCKLSIEAP 553
>06_01_1148 +
9629630-9629759,9629848-9630581,9630660-9631121,
9631203-9632035,9632118-9632288,9632368-9632668
Length = 876
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 526 DFRVLCSSEPDRGSRLTPPSCPLAISVP 443
D V + P R + LTPP C L+I P
Sbjct: 526 DIVVKMTPRPSRPTELTPPKCKLSIEAP 553
>05_07_0218 +
28470325-28470454,28470543-28471276,28471355-28471816,
28471898-28472730,28472813-28472983,28473063-28473180
Length = 815
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 526 DFRVLCSSEPDRGSRLTPPSCPLAISVP 443
D V + P R + LTPP C L+I P
Sbjct: 526 DIVVKMTPRPSRPTELTPPKCKLSIEAP 553
>02_05_0268 -
27302734-27303034,27303114-27303284,27303367-27304199,
27304281-27304742,27304821-27305554,27305643-27305772
Length = 876
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 526 DFRVLCSSEPDRGSRLTPPSCPLAISVP 443
D V + P R + LTPP C L+I P
Sbjct: 526 DIVVKMTPRPSRPTELTPPKCKLSIEAP 553
>01_02_0132 +
11444480-11444609,11444698-11445131,11445210-11445431,
11445510-11445971,11446053-11446885,11446968-11447138,
11447218-11447518
Length = 850
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 526 DFRVLCSSEPDRGSRLTPPSCPLAISVP 443
D V + P R + LTPP C L+I P
Sbjct: 500 DIVVKMTPRPSRPTELTPPKCKLSIEAP 527
>10_08_0965 + 21915842-21916906
Length = 354
Score = 28.7 bits (61), Expect = 3.2
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -3
Query: 307 SSSSWWWDWNGASEPAWR 254
+++ WWWD +G + PA R
Sbjct: 315 ATAEWWWDMDGGAAPAAR 332
>04_04_0858 + 28800691-28801155,28801293-28801515,28802555-28803048
Length = 393
Score = 28.3 bits (60), Expect = 4.2
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +3
Query: 153 VSARVHG--GVAVRGRHRSGPPAL*PDGTSRQQESPRHAGSLAPFQSHHQEEE 305
V++RV AV GR PA+ P R+ RHAG +A QSH +++
Sbjct: 108 VNSRVDSCSAAAVSGRDDGSSPAMSP---RRRSWEGRHAGGVAGRQSHETQKQ 157
>12_02_0472 - 19469512-19469541,19469755-19469785,19469975-19471356
Length = 480
Score = 27.9 bits (59), Expect = 5.5
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 85 FKGEGAACGTSVVKVAHQMISSRSPRGFTVASPSEDATA 201
F + + T+ A ++I SRS R A+P EDA A
Sbjct: 316 FTRQASRSTTTTTTTAFKVIRSRSSRAAATAAPPEDAPA 354
>02_02_0509 -
11064209-11064470,11065945-11066132,11066249-11066493,
11066816-11066987,11067090-11067496,11068443-11068587
Length = 472
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/55 (23%), Positives = 23/55 (41%)
Frame = +1
Query: 88 KGEGAACGTSVVKVAHQMISSRSPRGFTVASPSEDATAPDPQHYNLMARRGSKSL 252
+ GAA V H +S R PR + + + P+ N+ + GS ++
Sbjct: 35 RSHGAAAAAPVASKGHLFLSQRQPRTSNLEAVGDVTAVPEDYTENMPSSSGSTNV 89
>09_03_0196 +
13374054-13374456,13375145-13375707,13375935-13375976,
13376059-13376087,13376309-13376534,13376970-13377008,
13377126-13377155
Length = 443
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 526 DFRVLCSSEPDRGSRLTPPSCPLAISVP 443
D V +S P+R + LTPP L+I P
Sbjct: 218 DIVVKMTSRPNRPTELTPPKSKLSIEAP 245
>08_02_0844 + 21798076-21798618
Length = 180
Score = 27.5 bits (58), Expect = 7.3
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -2
Query: 542 ACCWWGFSGALFFGAGPRLSTDSAKLPA 459
AC +W SG L GAG R D PA
Sbjct: 60 ACSYWKLSGYLEGGAGGRGGNDDGGAPA 87
>04_03_0472 - 16316440-16316740,16317046-16317614
Length = 289
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 499 PDRGSRLTPPSCPLAISVP 443
P R + LTPP C L+I P
Sbjct: 5 PSRPTELTPPKCKLSIEAP 23
>07_01_0344 - 2490700-2493249
Length = 849
Score = 27.1 bits (57), Expect = 9.7
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +1
Query: 106 CGT-SVVKV-AHQMISSRSPRGFTVASPSEDATAPD 207
CG+ S V + I SP+ FT++ P ATAPD
Sbjct: 34 CGSDSTTDVDGRRWIGDSSPKNFTLSLPGTVATAPD 69
>06_03_1347 - 29492460-29494685
Length = 741
Score = 27.1 bits (57), Expect = 9.7
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 7 VLHGIAPINTAVNSVTKPKPAGTDDGFKGEGAA 105
V H + P++ + +P PAG DG GE AA
Sbjct: 191 VAHHVHPVSLPL--CPRPPPAGESDGLAGEHAA 221
>03_01_0151 + 1206555-1206998,1207112-1207543
Length = 291
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 237 RQQESPRHAGSLAPFQSHHQEEEEWQPLLHITVRANRR 350
R++ PR + P + EE E Q + HI V NRR
Sbjct: 90 RKRPRPRPRAAPPPEKRKKPEEAENQRMTHIAVERNRR 127
>01_06_0680 + 31132683-31133499,31133597-31134717,31134811-31135713
Length = 946
Score = 27.1 bits (57), Expect = 9.7
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = -3
Query: 538 AAGGDFRVLCSSEPDRGSRLTPPSCPLAISVPT 440
AAGG R CSS P TPP P I+ P+
Sbjct: 529 AAGGGVRTTCSSNP------TPPPSPPFIATPS 555
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.310 0.126 0.369
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,405,111
Number of Sequences: 37544
Number of extensions: 318887
Number of successful extensions: 1087
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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