Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32483
(561 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88173-4|AAK21386.1| 126|Caenorhabditis elegans Vacuolar h atpa... 69 3e-12
L13200-1|AAA28193.1| 1000|Caenorhabditis elegans Hypothetical pr... 28 5.3
U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical p... 27 7.0
U41551-5|AAK77627.2| 1050|Caenorhabditis elegans Clc-type chlor... 27 9.2
U41551-4|AAK77628.1| 1085|Caenorhabditis elegans Clc-type chlor... 27 9.2
AF319615-1|AAG49525.1| 1084|Caenorhabditis elegans CLC-type chlo... 27 9.2
AF173173-1|AAF13166.1| 978|Caenorhabditis elegans CLC chloride ... 27 9.2
AF078789-3|AAK68487.1| 295|Caenorhabditis elegans Hypothetical ... 27 9.2
AF078789-2|AAK21516.1| 318|Caenorhabditis elegans Hypothetical ... 27 9.2
AF040647-6|AAR30205.3| 436|Caenorhabditis elegans Hypothetical ... 27 9.2
>U88173-4|AAK21386.1| 126|Caenorhabditis elegans Vacuolar h atpase
protein 10 protein.
Length = 126
Score = 68.5 bits (160), Expect = 3e-12
Identities = 38/90 (42%), Positives = 52/90 (57%)
Frame = +2
Query: 122 KRKAKRLKQAKEEAQDEVXXXXXXXXXXXXXXXAKHMGTREGVAAKIDAETKVKIEEMNK 301
KRK +R KQAK+EAQ EV +++GT+E + +KI +T+ +I M +
Sbjct: 27 KRKLQRTKQAKQEAQAEVEKYKQQREAEFKAFEQQYLGTKEDIESKIRRDTEDQISGMKQ 86
Query: 302 MVQTQKEAVIKDVLNLVYDIKPELHINYRL 391
V K+AVI +L LV DIKPELH N L
Sbjct: 87 SVAGNKQAVIVRLLQLVCDIKPELHHNLTL 116
Score = 53.6 bits (123), Expect = 9e-08
Identities = 26/34 (76%), Positives = 30/34 (88%)
Frame = +1
Query: 43 MASQTQGIQQLLAAEKRAAEKVSEAREAKSETPK 144
MASQTQGIQQLLAAEKRAAEK++EAR+ K + K
Sbjct: 1 MASQTQGIQQLLAAEKRAAEKINEARKRKLQRTK 34
>L13200-1|AAA28193.1| 1000|Caenorhabditis elegans Hypothetical
protein ZK1236.3a protein.
Length = 1000
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 162 LKMKLKSTDRSVK-GSSKNLKPSTWVPGKVLRPRSMPR 272
+ +K S S K SS+ LKP T++P P SMP+
Sbjct: 3 INIKYSSKFSSSKTSSSEELKPKTYIPAYYQPPVSMPK 40
>U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical
protein C52B9.8 protein.
Length = 1336
Score = 27.5 bits (58), Expect = 7.0
Identities = 10/20 (50%), Positives = 17/20 (85%)
Frame = +2
Query: 113 RQGKRKAKRLKQAKEEAQDE 172
R+ +++AKRLK+ KEE +D+
Sbjct: 1278 RRARKEAKRLKRQKEEQEDD 1297
>U41551-5|AAK77627.2| 1050|Caenorhabditis elegans Clc-type chloride
channel protein4, isoform a protein.
Length = 1050
Score = 27.1 bits (57), Expect = 9.2
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -1
Query: 435 VRRKLCIKYNNFA*FKR*LMWSSGLMSYTRFKTSLMTASFC 313
++RK YN + + L+W GL+ + + L+ AS C
Sbjct: 169 IQRKTVSIYNIYGSDQSYLLWGCGLLGWCGYMIGLVAASAC 209
>U41551-4|AAK77628.1| 1085|Caenorhabditis elegans Clc-type chloride
channel protein4, isoform b protein.
Length = 1085
Score = 27.1 bits (57), Expect = 9.2
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -1
Query: 435 VRRKLCIKYNNFA*FKR*LMWSSGLMSYTRFKTSLMTASFC 313
++RK YN + + L+W GL+ + + L+ AS C
Sbjct: 169 IQRKTVSIYNIYGSDQSYLLWGCGLLGWCGYMIGLVAASAC 209
>AF319615-1|AAG49525.1| 1084|Caenorhabditis elegans CLC-type
chloride channel CLH-4b protein.
Length = 1084
Score = 27.1 bits (57), Expect = 9.2
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -1
Query: 435 VRRKLCIKYNNFA*FKR*LMWSSGLMSYTRFKTSLMTASFC 313
++RK YN + + L+W GL+ + + L+ AS C
Sbjct: 169 IQRKTVSIYNIYGSDQSYLLWGCGLLGWCGYMIGLVAASAC 209
>AF173173-1|AAF13166.1| 978|Caenorhabditis elegans CLC chloride
channel protein protein.
Length = 978
Score = 27.1 bits (57), Expect = 9.2
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -1
Query: 435 VRRKLCIKYNNFA*FKR*LMWSSGLMSYTRFKTSLMTASFC 313
++RK YN + + L+W GL+ + + L+ AS C
Sbjct: 97 IQRKTVSIYNIYGSDQSYLLWGCGLLGWCGYMIGLVAASAC 137
>AF078789-3|AAK68487.1| 295|Caenorhabditis elegans Hypothetical
protein Y44E3B.1b protein.
Length = 295
Score = 27.1 bits (57), Expect = 9.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 83 LKNALRRKSARQGKRKAKRLKQAKEEAQDEV 175
LK A + R+ + KAK L+ K+E DE+
Sbjct: 233 LKRARNNDAVRKSRNKAKELQLQKDEEYDEM 263
>AF078789-2|AAK21516.1| 318|Caenorhabditis elegans Hypothetical
protein Y44E3B.1a protein.
Length = 318
Score = 27.1 bits (57), Expect = 9.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 83 LKNALRRKSARQGKRKAKRLKQAKEEAQDEV 175
LK A + R+ + KAK L+ K+E DE+
Sbjct: 233 LKRARNNDAVRKSRNKAKELQLQKDEEYDEM 263
>AF040647-6|AAR30205.3| 436|Caenorhabditis elegans Hypothetical
protein F54D12.7 protein.
Length = 436
Score = 27.1 bits (57), Expect = 9.2
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -1
Query: 537 VGSKKTCRLHTLVTMICQINIQFIFLNKSDQIKLVRRKL 421
+ S +TC L T +I + IFL SD +K ++ KL
Sbjct: 389 LSSLETCFLKTTKPVISTLFYTIIFLQYSDTVKTLQTKL 427
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,001,063
Number of Sequences: 27780
Number of extensions: 187391
Number of successful extensions: 586
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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