Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32476
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    28   1.4  
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi...    26   4.4  
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom...    25   7.7  
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha...    25   7.7  

>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = +2

Query: 446 TSVALAPVEDSIGSFT-TTAGAATIVLEPTDTSSLITSVTLAS 571
           TS  +APV  S+ S +  +AG+AT  + PT +SS+  S  +AS
Sbjct: 193 TSSYVAPVSSSVASSSEISAGSATSYV-PTSSSSIALSSVVAS 234


>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +2

Query: 488 FTTTAGAATIVLEPTDTSSLITSVTLASR*RLNYIIYNNSRCCNNS 625
           F +  G A    +PTDT +++++  L+   + +Y   N S C N S
Sbjct: 5   FRSKRGMARAEFQPTDTLAMLSAKILSDILKNDYSPENVSLCQNES 50


>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
 Frame = +2

Query: 95  LKLLHFHSFY*DLTSIKVAPVSAVTVSTGFDXXXXXXXXXXXXXXXXRSTVGDPVV-IAV 271
           ++ L  H+ Y  ++SI   P+  + VS  +D                     +P++ +++
Sbjct: 131 VRCLKGHTNY--VSSIDFNPLGTLLVSGSWDETVRIWNLQDGTCLRMLPAHSEPIISVSI 188

Query: 272 SASGAVTITASGTASARIF 328
           SA G +  TAS    ARI+
Sbjct: 189 SADGTLCATASYDGMARIW 207


>SPAPJ696.01c |vps17||retromer complex subunit
           Vps17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 549

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 327 KILADAVPEAVIVTAPEAETAITTG 253
           K L    PE +I   PEA+T++++G
Sbjct: 147 KYLISTHPECLIPAVPEAKTSVSSG 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,063,637
Number of Sequences: 5004
Number of extensions: 36422
Number of successful extensions: 99
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)