Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32475
         (400 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH comple...    25   5.7  
SPAC57A10.14 |sgf11||SAGA complex subunit Sgf11 |Schizosaccharom...    25   5.7  
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    24   10.0 
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    24   10.0 
SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces ...    24   10.0 
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    24   10.0 
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe...    24   10.0 

>SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH complex
           subunit Tfb2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 447

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 116 GEYLTIVSRXXXXXXXXXSMGDGNHSPSGGPCARQEQ 226
           G+Y+T+ S          + G GNH+  G PC  +++
Sbjct: 88  GQYITLNSEFRKQFITALT-GGGNHNSFGVPCTDEDK 123


>SPAC57A10.14 |sgf11||SAGA complex subunit Sgf11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 77  LSAMTCPSSNKACGEYLT 130
           LS   CP+ NK C +Y T
Sbjct: 35  LSLQKCPACNKHCRQYCT 52


>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 135 TIVKYSPQALFEEGHVIA 82
           +I KY PQAL   G++IA
Sbjct: 481 SITKYLPQALQHSGYLIA 498


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 201 PDGEWLPSPMDYSNARGRAKRLTIV 127
           PD + +P P+DYS  +G+   LT++
Sbjct: 135 PDQK-IPFPVDYSTVQGKQVVLTVL 158


>SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 485

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 6/26 (23%), Positives = 21/26 (80%)
 Frame = -2

Query: 147 AKRLTIVKYSPQALFEEGHVIALRKH 70
           ++++T+V+++PQ  F+  +++A+ ++
Sbjct: 418 SQKVTVVRWNPQLPFDHTNLVAMTRN 443


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 278 ILFSIRCNVILCIKALNHASNIRLLLQLIF 367
           I FSI   ++ C K L     + L+  LIF
Sbjct: 272 ITFSIASKILSCCKKLKQVELVDLIPDLIF 301


>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 280 SIFHSL*RYIVYQGVESCIEYKTTFTVNLPLVL 378
           ++F +L RY+  QG+ + I Y   F   L ++L
Sbjct: 225 AVFEALKRYLQAQGIFTPITYVLCFAAPLNILL 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,673,912
Number of Sequences: 5004
Number of extensions: 31533
Number of successful extensions: 75
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)