Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32475
         (400 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0021 + 311914-312399,314218-314310,314391-314672,314754-31...    27   4.1  
11_02_0051 + 7776312-7780228,7780627-7780695,7781920-7781979,778...    27   7.2  
01_02_0020 - 10269252-10269314,10269442-10269483,10269759-102702...    27   7.2  
01_01_0328 - 2664412-2664535,2665388-2665465,2667784-2667895,266...    27   7.2  

>04_01_0021 +
           311914-312399,314218-314310,314391-314672,314754-314826,
           315273-315405,315476-315629,315763-315843,316174-316296,
           316629-316787,316862-316996,317159-317254,317416-317910,
           318651-318722,319496-319537
          Length = 807

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -2

Query: 72  HSGGELIPKPDGTW 31
           HS  EL P+PDGTW
Sbjct: 81  HSEEELRPRPDGTW 94


>11_02_0051 + 7776312-7780228,7780627-7780695,7781920-7781979,
            7782225-7782324,7782720-7782801,7782928-7782940,
            7783621-7783681
          Length = 1433

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 5    SAFPVDHFCHVPSGFGMSSPPLCFLSAMTCP 97
            S+F + H   + S    + P LCFL  ++CP
Sbjct: 1114 SSFAIGHLRSLESLSLNNMPDLCFLEGLSCP 1144


>01_02_0020 -
           10269252-10269314,10269442-10269483,10269759-10270244,
           10270338-10270421,10270491-10270556,10270718-10270810,
           10270901-10271987,10273338-10273362,10273881-10273899
          Length = 654

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +1

Query: 76  PERYDMSFFKQGLWRVLNDSQPLSSAPSIAVVHGRR 183
           P   +MS    G+W   ND   L      AVVHGR+
Sbjct: 2   PGSREMSIISGGMWSDGNDFAELLWENGQAVVHGRK 37


>01_01_0328 - 2664412-2664535,2665388-2665465,2667784-2667895,
            2668344-2668410,2668473-2668562,2668672-2668787,
            2668999-2671924
          Length = 1170

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = +1

Query: 316  QGVESCIEYKTTFTVNLPLVLPT 384
            Q + +C ++K+  ++N+PL +PT
Sbjct: 1047 QSLRTCADFKSNESLNMPLSMPT 1069


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,170,144
Number of Sequences: 37544
Number of extensions: 220668
Number of successful extensions: 503
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)