Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32475
         (400 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   0.97 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   1.7  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   3.0  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   3.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   3.0  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   3.0  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   3.0  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   3.9  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   6.9  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   6.9  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.4 bits (48), Expect = 0.97
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -2

Query: 93  HVIALRKHSGGELI-PKPDGTWQK 25
           +VI  +  +GG L+ P PD TW K
Sbjct: 89  NVITNKTGNGGPLLAPYPDWTWAK 112


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 210 HGPPDGEWLPSPMDYSNARG 151
           H P +  WLP  + Y+NA G
Sbjct: 96  HVPSEHIWLPDIVLYNNADG 115


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 204 PPDGEWLPSPMDYSNARG 151
           PPD  W P  + ++NA G
Sbjct: 104 PPDKVWKPDIVLFNNADG 121


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 210 HGPPDGEWLPSPMDYSNARG 151
           H P D  W P  + Y+NA G
Sbjct: 104 HVPSDHIWRPDIVLYNNADG 123


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 210 HGPPDGEWLPSPMDYSNARG 151
           H P D  W P  + Y+NA G
Sbjct: 104 HVPSDHIWRPDIVLYNNADG 123


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 210 HGPPDGEWLPSPMDYSNARG 151
           H P D  W P  + Y+NA G
Sbjct: 100 HVPSDHIWRPDIVLYNNADG 119


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 204 PPDGEWLPSPMDYSNARGRAKRLTIVK 124
           P +  WLP  + Y+NA G     T+ K
Sbjct: 98  PSEHIWLPDIVLYNNADGEYGVTTMTK 124


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 204 PPDGEWLPSPMDYSNARG 151
           P +  WLP  + Y+NA G
Sbjct: 111 PSENIWLPDIVLYNNADG 128


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -1

Query: 43  GWYVAKMIYWKRTV 2
           GW +A M  W R V
Sbjct: 181 GWTIAPMFGWNRYV 194


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
          rhodopsin protein.
          Length = 154

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -1

Query: 43 GWYVAKMIYWKRTV 2
          GW +A M  W R V
Sbjct: 57 GWTIAPMFGWNRYV 70


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,767
Number of Sequences: 438
Number of extensions: 2283
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)