Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32466
(665 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0533 + 22997139-22997683,22998024-22998073,22998142-229981... 35 0.067
04_04_0283 - 24132112-24132189,24132227-24132745 31 1.1
09_06_0362 + 22545891-22546541 29 2.5
07_01_0463 + 3502708-3503535 29 2.5
01_07_0370 - 43119049-43120278,43121376-43121420,43121421-431216... 29 2.5
01_05_0410 + 21914995-21915168,21915268-21915353,21915446-219156... 29 2.5
09_04_0418 - 17406313-17407419 29 3.3
06_03_1338 - 29440373-29440534,29440993-29441083,29441799-294419... 29 3.3
05_01_0426 + 3364341-3364713,3364823-3364963,3365389-3365510,336... 29 4.4
05_01_0421 + 3308692-3309070,3309199-3309339,3309776-3309897,331... 29 4.4
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 29 4.4
01_01_0632 - 4761091-4761198,4761311-4761412,4762248-4762376,476... 29 4.4
12_01_0319 + 2440129-2440661,2440875-2440902 28 5.8
01_06_0447 + 29452194-29452361,29453232-29453317,29453403-294536... 28 5.8
01_06_0036 + 25786530-25786756,25788000-25788076,25788538-257886... 28 7.7
>01_05_0533 +
22997139-22997683,22998024-22998073,22998142-22998194,
22998286-22998303
Length = 221
Score = 34.7 bits (76), Expect = 0.067
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 3/93 (3%)
Frame = +3
Query: 213 PILPFGFMMRCLKAYASPNMSGNSKDSKDDKENNQSVLPNTTS--TPSDTNGFLKVSQSQ 386
P + FG L+ + P +S + +E++ S T T ++ G LK + +
Sbjct: 70 PFICFGRAAAGLEGASPPKLSSGNTSGSSSEESSASANEGTNGSLTGNEKKGCLKSNSRR 129
Query: 387 EGISEGPSSFEEVSPSD-LAELQAHKSGSERRK 482
+ + E P + L E+Q KSG ERRK
Sbjct: 130 DSLEHCIVVSEGEEPRESLEEVQTLKSGMERRK 162
>04_04_0283 - 24132112-24132189,24132227-24132745
Length = 198
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/66 (27%), Positives = 34/66 (51%)
Frame = +3
Query: 303 KENNQSVLPNTTSTPSDTNGFLKVSQSQEGISEGPSSFEEVSPSDLAELQAHKSGSERRK 482
+EN Q L T PS+ GF K S++G ++ P+ + + +L E + S + R+
Sbjct: 110 EENLQQGLSRTGHHPSEIKGFSKKENSEDGWTQEPNPGQ--AKDNLGEAASRVSEQQDRR 167
Query: 483 SSDTTI 500
S +++
Sbjct: 168 SGASSL 173
>09_06_0362 + 22545891-22546541
Length = 216
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +3
Query: 432 SDLAELQAHKSGSERRKSSDTT---ISAASLQSEHTVTGTTPPEDKSQQYV 575
+D+A+ + S S SSD + SAA+ + EH + PP + QQ +
Sbjct: 16 ADMADSSSSSSSSSSSSSSDDSDMRASAAAAEPEHRRSPAPPPPPRQQQLI 66
>07_01_0463 + 3502708-3503535
Length = 275
Score = 29.5 bits (63), Expect = 2.5
Identities = 23/96 (23%), Positives = 36/96 (37%)
Frame = +3
Query: 282 SKDSKDDKENNQSVLPNTTSTPSDTNGFLKVSQSQEGISEGPSSFEEVSPSDLAELQAHK 461
SKDSK DKEN +S + D G K + +E + EE + + K
Sbjct: 76 SKDSKKDKENKKSDKKDDEHDDEDEEGKKKEKEMKEKKKDKSDKKEEGKKKKDGDEEEGK 135
Query: 462 SGSERRKSSDTTISAASLQSEHTVTGTTPPEDKSQQ 569
E++K D + + G E K ++
Sbjct: 136 K-KEKKKDKDGDEKEGKKEKKKDKDGDEEEEGKKKE 170
>01_07_0370 -
43119049-43120278,43121376-43121420,43121421-43121662,
43121908-43122686,43123123-43123463,43123565-43123785,
43123866-43124176,43124257-43124516,43124836-43124918,
43124940-43125036,43125132-43125305,43126215-43126592
Length = 1386
Score = 29.5 bits (63), Expect = 2.5
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Frame = +3
Query: 246 LKAYASPNMSGNSKDSKDDKENNQSVLPNTTSTPS--DTNGFLKVSQSQEGISEGPSSFE 419
++ Y P+ +DS +S PN + +PS T+GFL S + S
Sbjct: 625 IRNYKEPSSFQIERDSSASHSFQESSSPNMSKSPSLQKTHGFLAFRNSDANHNSHESPNI 684
Query: 420 EVSPSD-LAELQAHKSGSERRKS 485
+ PS+ +AE + SER S
Sbjct: 685 QSPPSEQMAETRLPTVASERAPS 707
>01_05_0410 +
21914995-21915168,21915268-21915353,21915446-21915656,
21915869-21915998,21916740-21916924,21917014-21917145,
21917329-21917433
Length = 340
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 3 CWLLNNF-KTVGTTGKRIVFAGDSAGANLVAACT 101
CW+LNNF +VGT + AG +AG V CT
Sbjct: 112 CWILNNFAPSVGTGPVVDLLAGSAAGGTAV-LCT 144
>09_04_0418 - 17406313-17407419
Length = 368
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 48 RIVFAGDSAGANLVAACTVKILSTGL 125
R+V AGDSAGAN+ +++ G+
Sbjct: 205 RVVLAGDSAGANMAHNAAIRLRKEGI 230
>06_03_1338 -
29440373-29440534,29440993-29441083,29441799-29441942,
29442094-29442159,29442589-29442729,29443077-29443178,
29443264-29443338,29443469-29443549,29443670-29443739,
29444063-29444139,29444392-29444660
Length = 425
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +3
Query: 6 WLLNNFKTVGTTGKRIVFAGDSAGANLVAACTV 104
++ NN + G +RI G SAGA+ +AACT+
Sbjct: 211 FVCNNIASYGGDPERIYLVGQSAGAH-IAACTL 242
>05_01_0426 +
3364341-3364713,3364823-3364963,3365389-3365510,
3365939-3366202,3366289-3366419,3366819-3367026,
3367121-3367186,3367276-3367353,3368038-3368079
Length = 474
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = +3
Query: 285 KDSKDDKENNQSVLPNTTSTPSDTNGFLKVSQSQEGISEGPSSFEEVSP 431
+D KDD + + LP TPSD N L +S+S +S PS + +SP
Sbjct: 135 RDKKDDP-STAAALP----TPSDKNMVLGMSRSIVRVSSPPSEGKLISP 178
>05_01_0421 +
3308692-3309070,3309199-3309339,3309776-3309897,
3310369-3310632,3310719-3310849,3311254-3311461,
3311564-3311632,3311722-3311799,3312448-3312621
Length = 521
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = +3
Query: 285 KDSKDDKENNQSVLPNTTSTPSDTNGFLKVSQSQEGISEGPSSFEEVSP 431
+D KDD + + LP TPSD N L +S+S +S PS + +SP
Sbjct: 137 RDKKDDP-STAAALP----TPSDKNMVLGMSRSIVRVSSPPSEGKLISP 180
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 28.7 bits (61), Expect = 4.4
Identities = 26/115 (22%), Positives = 45/115 (39%), Gaps = 1/115 (0%)
Frame = +3
Query: 234 MMRCLKAYASPNMSGNSKDSKDDKENNQSVLPNTTSTPSDTNGFLKVSQSQEGISEGPS- 410
++RC A+P M+ S KE+ + D +G L+V++ + G S
Sbjct: 612 VLRCRSGMAAPAMARRSSSCSSSKEHTWMLF-----LGGDADGKLRVARELASLVFGSSK 666
Query: 411 SFEEVSPSDLAELQAHKSGSERRKSSDTTISAASLQSEHTVTGTTPPEDKSQQYV 575
SF + + A S S +SS +T + T TT + Q ++
Sbjct: 667 SFVSIGGAANASPPPSSSSSSPARSSGSTEQPHRSKRPWAETTTTTTSGRDQDHL 721
>01_01_0632 -
4761091-4761198,4761311-4761412,4762248-4762376,
4763169-4763297,4763419-4763508,4763869-4763918,
4764984-4765115,4765218-4765376,4765723-4765759,
4766304-4766339
Length = 323
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +3
Query: 231 FMMRCLKAYASPNMSGNSKDSKDDKENNQSVLPNTTSTPSDTN 359
F+ LKA A+PN+ +S D +E + + P T+S P+ N
Sbjct: 195 FIQFLLKAGANPNIPDDSAALHDCREEVEMLFPLTSSIPNVPN 237
>12_01_0319 + 2440129-2440661,2440875-2440902
Length = 186
Score = 28.3 bits (60), Expect = 5.8
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +3
Query: 432 SDLA--ELQAHKSGSERRKSSDTTISAASLQSEHTVTGTTPP 551
+DLA ELQ+ GS R S +T+S A+ S T +G PP
Sbjct: 9 ADLAADELQSLSFGSSERSRSGSTVSTATTVST-TTSGPPPP 49
>01_06_0447 +
29452194-29452361,29453232-29453317,29453403-29453610,
29454252-29454381,29454561-29454745,29454858-29454989,
29455747-29455851
Length = 337
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 3 CWLLNNFKTVGTTGKRIVFAGDSAGANLVAACT 101
CW+LNN ++GT + AG ++G V CT
Sbjct: 110 CWILNNCPSLGTGPLVDLLAGSASGGTAV-LCT 141
>01_06_0036 +
25786530-25786756,25788000-25788076,25788538-25788625,
25788706-25788786,25788866-25788940,25789048-25789149,
25789589-25789726,25791559-25791585,25791696-25791786,
25792423-25792584
Length = 355
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = +3
Query: 6 WLLNNFKTVGTTGKRIVFAGDSAGANLVAACTVKILSTGLRKPDGMFLAYA 158
++ NN + G RI G SAGA+ +AAC ++ +++ G ++++
Sbjct: 203 YVCNNIASYGGDPNRIYLVGQSAGAH-IAACA--LIEQAVKESSGQSISWS 250
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,044,654
Number of Sequences: 37544
Number of extensions: 377860
Number of successful extensions: 1495
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1495
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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