Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32445
         (604 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1522 + 27651983-27652690                                         29   2.1  
02_05_0561 - 29965968-29966326,29966375-29966414,29966877-299669...    29   3.7  
02_01_0189 - 1273313-1274157,1274595-1275549                           28   5.0  
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902     28   6.5  
08_02_1271 - 25762750-25764276                                         28   6.5  
03_05_1024 + 29802831-29804208,29804710-29804759,29805569-298059...    27   8.7  
01_06_0916 + 32950575-32950656,32952061-32952272,32952408-329524...    27   8.7  

>08_02_1522 + 27651983-27652690
          Length = 235

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 22/63 (34%), Positives = 28/63 (44%)
 Frame = +2

Query: 167 AGVASAQITLDGIRCGQLICQLDEYCSPETNRCAPCNVVCXKTHHNYDSGLCVKECQGYL 346
           A ++S  +T++ I  G L    D YCS E   C P N VC         G    EC   L
Sbjct: 27  ACISSPSLTIEAISDG-LRGLGDIYCSIEEIMCLPSNQVCSPQQRKLLDG--EMECSLEL 83

Query: 347 LDL 355
           LD+
Sbjct: 84  LDM 86


>02_05_0561 -
           29965968-29966326,29966375-29966414,29966877-29966951,
           29967003-29967107,29967453-29967592,29967691-29967775
          Length = 267

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +2

Query: 215 QLICQLDEYCSPETNRCAPCNVVCXKTHHNYDSGLCVKECQ 337
           +  C  +EY + E+N CA         +  Y  GL   EC+
Sbjct: 182 EFACPFNEYINDESNDCASTMFSYINLYGKYPPGLFANECR 222


>02_01_0189 - 1273313-1274157,1274595-1275549
          Length = 599

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = +2

Query: 155 VLILAGVASAQITLDGIRC-GQLICQLDEYCSPETN-RCAPCNV 280
           VL +AG     +  DG    G  +C  D +CSPE    C P  V
Sbjct: 542 VLGVAGAGGVSVVRDGCALEGLCVCSEDAHCSPEKGYLCRPGRV 585


>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
          Length = 781

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +1

Query: 373 GDGPATQRFGKHTP*SSNCSDRHRCGSGSTGPSSHHIMQRKSLLEIFKAKVPASQEPRE 549
           G GP   RFG+    + + SD H+ G G  G      ++  +L    K    +S++ R+
Sbjct: 437 GTGPKRFRFGELAIATDDFSDEHKLGEGGFGSVYRGFLKELNLDVAIKRVSKSSKQGRK 495


>08_02_1271 - 25762750-25764276
          Length = 508

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +2

Query: 155 VLILAGVASAQITLDGIRC-GQLICQLDEYCSPETN-RCAP 271
           VL +AG     +  +G    G  +C  DE+CSPE    C P
Sbjct: 447 VLGVAGAGGVNVARNGCGMEGLCVCSEDEHCSPEKGYLCRP 487


>03_05_1024 +
           29802831-29804208,29804710-29804759,29805569-29805954,
           29807753-29807813,29807921-29807941
          Length = 631

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
 Frame = -1

Query: 199 VQGDLSGGDAGENQDAHESRHLSLCNL*STVYIF-----AGTDTSTVV*YFLNLN--FNF 41
           ++GD  G + G   D  E+      N+ S ++ F      G   + ++   +N N  F F
Sbjct: 115 IEGDEHGAEPGAMYDHAEAAAAGASNMLSEMFNFPSQPPTGPSATELLASQMNANYRFGF 174

Query: 40  KASRGLTGNNGG 5
           + + GL G  GG
Sbjct: 175 RQAAGLAGGEGG 186


>01_06_0916 +
           32950575-32950656,32952061-32952272,32952408-32952448,
           32952916-32952959,32953259-32953561,32954145-32954302,
           32954849-32954965,32955562-32955747,32955872-32956031,
           32956079-32956151,32958613-32958889,32959024-32959099,
           32960653-32960720,32961270-32961361,32961505-32961578,
           32961777-32961820,32962155-32962206,32962585-32962704,
           32962777-32962889,32963023-32963110,32963492-32963577,
           32964172-32964258,32964491-32964594,32964996-32965098,
           32965250-32965345,32965456-32965645,32965777-32965838,
           32966014-32966118,32966782-32966983,32967092-32967300,
           32968510-32968673,32968799-32968850,32968935-32969021,
           32969319-32969441,32969567-32969605,32969606-32969860
          Length = 1447

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 146 FVCVLILAGVASAQITLDGIRCGQ 217
           F+ +LILA V +    L GI CGQ
Sbjct: 272 FITILILASVPNPLFDLAGIMCGQ 295


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,962,239
Number of Sequences: 37544
Number of extensions: 343206
Number of successful extensions: 871
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)