Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32445
         (604 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.3  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               22   4.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   4.0  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   7.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.3  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 584  EGCDASSH*GTASRGSWLAGTFALNISKR 498
            +G  +S     +S GSW AGT +    KR
Sbjct: 1064 DGITSSGSDSGSSNGSWTAGTVSQQKQKR 1092


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 85  CLFLRKCTRCFIDY 126
           CL  +K +RC IDY
Sbjct: 111 CLTAQKFSRCVIDY 124


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 156 THTNPDISLSVIYK 115
           T TNP ++ SV+YK
Sbjct: 675 TETNPKLARSVLYK 688


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
          monooxygenase protein.
          Length = 499

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 67 YFLNLNFNFKASRGLTG 17
          Y+L   F+F  SRG+ G
Sbjct: 20 YYLTSTFDFWKSRGVVG 36


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/29 (34%), Positives = 12/29 (41%)
 Frame = +2

Query: 2   PTSVIARQASGGFEVKIQI*KVSYHSACV 88
           P  V+   A G FEV +      YH   V
Sbjct: 113 PDIVLYNNADGNFEVTLATKATIYHQGLV 141


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 371 SETAPPPNDLGSIHREA 421
           S T PP  D  SIH E+
Sbjct: 54  SMTIPPSIDRSSIHEES 70


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,715
Number of Sequences: 438
Number of extensions: 3776
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)