Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32444
         (604 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1356 + 35894170-35894397,35894475-35894663,35894768-35895319     28   5.0  
09_02_0047 - 3528462-3528986,3531432-3531818                           27   8.7  

>02_05_1356 + 35894170-35894397,35894475-35894663,35894768-35895319
          Length = 322

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 177 YFAVLFSGKGMLAQKHILLIHMKT 248
           Y+ +L SG+G+L+    LL H KT
Sbjct: 256 YYRMLLSGRGLLSSDEALLTHPKT 279


>09_02_0047 - 3528462-3528986,3531432-3531818
          Length = 303

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +3

Query: 333 GVCYKCYKLIRISFKSRLKY*IKQIEYKVP 422
           G C + Y ++ +SF +RLK  I ++ +++P
Sbjct: 240 GDCNEMYNMVALSFNARLKRLIGRLNWELP 269


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,736,354
Number of Sequences: 37544
Number of extensions: 183396
Number of successful extensions: 268
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)