Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32443
         (363 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1 |Schizos...    25   4.8  
SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-phosphat...    24   6.3  
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    24   6.3  
SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyc...    24   6.3  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    24   6.3  
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces...    24   8.3  
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc...    24   8.3  
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2...    24   8.3  

>SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 293

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 343 FVNTSIGDWTTTNKFHHKIFNPTSQY 266
           +V  + G W +T + HH  F  T+ Y
Sbjct: 71  YVEQNFGKWLSTTRLHH-YFTVTNSY 95


>SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-
           phosphatidyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = -3

Query: 361 VKSYTY--FVNTSIGDWTTTNKFHHK 290
           +KSY +  F NT +G W +T   HHK
Sbjct: 436 LKSYIFEKFTNTILGFWLSTQ--HHK 459


>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +2

Query: 218 YLIYCDIMFDQSTSLIIL*CWVKNLMMKFICCCPIAN 328
           Y +Y DIM D+ T      CW+    M F     IAN
Sbjct: 107 YTVY-DIMHDRGTPYFPFLCWICLWSMIFHFIIAIAN 142


>SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 240

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -1

Query: 300 FIIRFLTQHHNIIRDVD*SNMMSQ*MRYLSAELRQRS--EYYF 178
           +I+       NI++D+D  +++SQ +  + + L +R   EY F
Sbjct: 65  YIVLITNLQSNILQDIDTLHLLSQVVTSICSSLEEREILEYAF 107


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 218 IFRLSFVNVVNTTFATLKYVLAVEEEHLSH 129
           +F     +  N+ F+T  ++ AVE  HL+H
Sbjct: 140 LFESIVPDTTNSPFSTEAFLQAVENGHLNH 169


>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 745

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 351 IHISLTPQLAIGQQQINFIIRFLTQ 277
           +H+ + P +A  Q   N++I F+TQ
Sbjct: 350 LHLIVEPMVARKQLTNNYLINFITQ 374


>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 10/22 (45%), Positives = 17/22 (77%), Gaps = 3/22 (13%)
 Frame = -1

Query: 315 QQQINFII---RFLTQHHNIIR 259
           +QQ+N +    RFLT++HN++R
Sbjct: 106 KQQLNSLSTSERFLTKYHNLVR 127


>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 825

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 316 TTTNKFHHKIFNPTSQYNKGR*LIEH 239
           TTT  F+  + N TS+Y+  R  ++H
Sbjct: 748 TTTTPFNMMMCNNTSRYHVARMALQH 773


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,454,611
Number of Sequences: 5004
Number of extensions: 26478
Number of successful extensions: 57
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)