Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32443
         (363 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   0.48 
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   3.4  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    21   5.9  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    21   5.9  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 24.2 bits (50), Expect = 0.48
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 148 STANTYLSVAKVVFTTLTKLSRKISHLL*HH 240
           ST  + + +    +  L K +R ++HLL HH
Sbjct: 738 STIQSLMKLKSPEWKDLAKKARSVNHLLTHH 768


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 356 IIYIFR*HLNWRLDNN 309
           ++Y FR   +WR+ NN
Sbjct: 209 LVYDFRNSRSWRITNN 224


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = +3

Query: 300 NLFVVVQSPIEVLTKYV 350
           N+F +++S  E +T+Y+
Sbjct: 61  NIFKIIKSTNEKITRYI 77


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = +3

Query: 300 NLFVVVQSPIEVLTKYV 350
           N+F +++S  E +T+Y+
Sbjct: 44  NIFKIIKSTNEKITRYI 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,506
Number of Sequences: 438
Number of extensions: 1825
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8556345
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)