Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32434
         (597 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   4.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   6.9  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   6.9  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   9.2  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 505 KYI*LEMHTVSLNNIIFLALKLYNFRSTI 591
           KY+   M  V+L+ ++ +A+   NFRS +
Sbjct: 301 KYLLFTMVLVTLSVVVTIAVLNVNFRSPV 329


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +2

Query: 56   VGTTTLPISAAKQSFRFERWSSRCNYT*DLRTYIS 160
            V   TL     + S     WS RC +  +L +++S
Sbjct: 907  VWQVTLNARLVELSLGSNPWSCRCKFLQELSSWVS 941


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -1

Query: 288 NTVDWFRVKGNALQKCWTSSQPI 220
           N V +F +  N+   CW   QP+
Sbjct: 315 NGVLFFGLMNNSAIGCWNEHQPL 337


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -1

Query: 288 NTVDWFRVKGNALQKCWTSSQPI 220
           N V +F +  N+   CW   QP+
Sbjct: 315 NGVLFFGLVNNSAIGCWNEHQPL 337


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,352
Number of Sequences: 438
Number of extensions: 2983
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)