Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32433
         (469 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...    29   0.27 
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...    29   0.27 
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    28   0.62 
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    27   1.4  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    27   1.9  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    27   1.9  
SPBC800.14c |||DUF1772 family protein|Schizosaccharomyces pombe|...    26   2.5  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    26   2.5  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    26   2.5  
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    26   3.3  
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    25   5.8  
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom...    25   5.8  
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha...    25   7.6  
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    25   7.6  

>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score = 29.5 bits (63), Expect = 0.27
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 47  DRVWHRALLSKLPSYGIPEGLCKWIASFLDG 139
           D V   A  S+LP YGI  GL  W A++  G
Sbjct: 72  DYVLAHAHSSELPRYGIKWGLANWTAAYATG 102


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 29.5 bits (63), Expect = 0.27
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 47  DRVWHRALLSKLPSYGIPEGLCKWIASFLDG 139
           D V   A  S+LP YGI  GL  W A++  G
Sbjct: 72  DYVLAHAHSSELPRYGIKWGLANWTAAYATG 102


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 28.3 bits (60), Expect = 0.62
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 246 IYRMKSVGESTEPCGTPALMV 184
           +YR KSV ES EP G P L +
Sbjct: 140 LYREKSVEESDEPSGIPILFI 160


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 173 SDTMTINAGVPQGSVLSPTLFILYINDMLSIDGMHCY 283
           S  +T+ + VP+ S      FI Y + +LSI  + C+
Sbjct: 39  SSRLTVRSAVPEKSAFGSIEFIFYFSVILSILTIACF 75


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 116 WIASFLDGRSITVVVDGDCSDTMTIN-AGVPQGS 214
           W  SFL G+ +TVV +   S+   IN   +P GS
Sbjct: 519 WSESFLAGKRLTVVKNQAVSNDDNINMVNIPDGS 552


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 197 GVPQGSVLSPTLFILYINDML 259
           G+PQGS+LS  L   Y+ D++
Sbjct: 703 GIPQGSILSSFLCHFYMEDLI 723


>SPBC800.14c |||DUF1772 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 160

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 255 MSLIYRMKSVGESTEPCGTPALMVMVSEQ 169
           MSL+Y  +SVG  T PCG+   +  ++ Q
Sbjct: 1   MSLVYLFQSVGILT-PCGSAGAIAYITSQ 28


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 197 GVPQGSVLSPTLFILYINDM 256
           G PQGS++SP L  +Y++ +
Sbjct: 420 GTPQGSIVSPILANIYLHQL 439


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 248 NDMLSIDGMHCYANDSTGD-ARYIGHQSLSQSVVQERRSKLVSEVES 385
           +DM   +    + N+S    ++ +G  SLS+   QE+ SKL   VES
Sbjct: 547 SDMYEKENTPIHHNESLNQLSKDLGSISLSEETKQEKPSKLKETVES 593


>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 206 QGSVLSPTLFILYINDMLSIDGMHCY 283
           + S L+ +L  LY+ D + ID  H Y
Sbjct: 502 KSSTLTESLAFLYLEDNMPIDAFHLY 527


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 219 STEPCGTPALMVMVSEQSPSTTTVMLRPSKKLAIHLQRP 103
           S++P GTP +       SPSTT V    +    I+ + P
Sbjct: 200 SSKPTGTPFVPKSPPSSSPSTTNVSNASTSSAPINPRAP 238


>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -2

Query: 411 PHLETRPRELSTSDTS 364
           PHLE R  EL+TSD S
Sbjct: 243 PHLEDRLAELNTSDIS 258


>SPAC823.13c |||mitochondrial inner membrane
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 350 ERRSKLVSEVESSLGRVSKWGELNLVQFNPL 442
           E+RS    EV   L R S W  ++L +F  L
Sbjct: 80  EKRSSSQREVNELLQRRSSWSTIDLERFTKL 110


>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 16/80 (20%), Positives = 37/80 (46%)
 Frame = +3

Query: 108 SASGSLAFWMGGASRSL*TVTVLIP*PLTLAFHKVRCSPPRFSSCISMTCCLLMACIAMR 287
           S S S  F++ G++  +  V +++     + F    CS  +  + I++  C+ ++C+++ 
Sbjct: 193 SDSSSSKFYLIGSTVGMYVVGLVLTILTYVFFCASSCSFNQAINTINLLLCIAVSCLSVH 252

Query: 288 MTARGMRDISAIRVSLKAWC 347
            T +     S +  S    C
Sbjct: 253 PTIQEYNPRSGLAQSSMVMC 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,065,427
Number of Sequences: 5004
Number of extensions: 42730
Number of successful extensions: 103
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)