Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32424
         (559 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...   211   5e-56
SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch...    34   0.012
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch...    26   3.3  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    25   7.5  
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur...    25   10.0 
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn...    25   10.0 

>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score =  211 bits (516), Expect = 5e-56
 Identities = 101/186 (54%), Positives = 131/186 (70%)
 Frame = +2

Query: 2   RDWNVDLIPKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKVPVDQKEALAS 181
           RDW VDL+PKFLMANG L  +LI+T VTRY+EFK I GSYVY+ G+I+KVP ++ EAL S
Sbjct: 69  RDWCVDLVPKFLMANGDLTNILIYTDVTRYIEFKQIAGSYVYRDGRIAKVPGNEMEALKS 128

Query: 182 DLMGMFEKRRFRNFLIYVQDFQEEDAKTWKDFDPSTANMQSLYDKFGLDRNTQDFTGHAL 361
            LM +FEKRR + FL +V +++E+D  T+KD +    +M+S++ KFGL   TQDF GHA+
Sbjct: 129 PLMSLFEKRRAKKFLEWVNNYREDDPSTYKDINIDRDSMESVFKKFGLQSGTQDFIGHAM 188

Query: 362 ALYLDDNYLQQPAXXTIRRIKLYSDSLAKXXXXXXXXXXXXXXXXXXXFARLSAIYGGTY 541
           ALYLDD YL++PA  T  RI LY+ S+AK                   FARLSAIYGGTY
Sbjct: 189 ALYLDDAYLKKPARETRERILLYASSIAKFGKSPYIYPLYGLGELPQGFARLSAIYGGTY 248

Query: 542 MLDKPI 559
           ML++P+
Sbjct: 249 MLNQPV 254


>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 34.3 bits (75), Expect = 0.012
 Identities = 38/179 (21%), Positives = 68/179 (37%), Gaps = 1/179 (0%)
 Frame = +2

Query: 26  PKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKI-SKVPVDQKEALASDLMGMFE 202
           P+ + A+  LVKLL  T + +YL  K      +    +   KVP  + +   +  + +  
Sbjct: 104 PQEIFASSELVKLLSETKIYKYLLLKPARSFRLLTSNEEWIKVPESRADIFNNKNLSLAS 163

Query: 203 KRRFRNFLIYVQDFQEEDAKTWKDFDPSTANMQSLYDKFGLDRNTQDFTGHALALYLDDN 382
           KR    F+ +V +  +E  +       S    + L + F L    ++   + L   L  +
Sbjct: 164 KRIVMRFMKFVSNIADEQNQNLVKEWESKPFYKFLEEVFQLSGAIEESIIYGLCQSLSKD 223

Query: 383 YLQQPAXXTIRRIKLYSDSLAKXXXXXXXXXXXXXXXXXXXFARLSAIYGGTYMLDKPI 559
              + A  T+  +K +                         F R SA+ GGT+ML + I
Sbjct: 224 IPTKDALDTV--LKYFHSFGMYGDYSYLLAMYGTGSELCQGFCRSSAVMGGTFMLGQAI 280


>SPBC1289.02c |uap2||U2 snRNP-associated protein
           Uap2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 218 NFLIYVQDFQEEDAKTWKDFDPSTANM 298
           N LIY+ + Q     TWKD+DP++  M
Sbjct: 22  NELIYIDEEQ-----TWKDYDPNSLKM 43


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 63  CLFTRASPGTWSLSPSKEVMFTKVEKS 143
           C+F R S  TWS+  S   M  ++ KS
Sbjct: 487 CVFIRTSMQTWSMFRSTHSMKQEIAKS 513


>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
           deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 398

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 18/71 (25%), Positives = 32/71 (45%)
 Frame = +2

Query: 53  LVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKVPVDQKEALASDLMGMFEKRRFRNFLIY 232
           +V  +I  G ++  E +   GS +     I+K P D+       + G  E+     FL+Y
Sbjct: 331 MVGCIIGRGGSKISEIRRTSGSKI----SIAKEPHDETGERMFTITGTHEENEKALFLLY 386

Query: 233 VQDFQEEDAKT 265
            Q   E+D ++
Sbjct: 387 QQLEMEKDRRS 397


>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
           synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 534

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 242 FQEEDAKTWKDFDPSTANMQSLYDK 316
           F EE  + W D+D +   + SLY++
Sbjct: 205 FYEEGKEFWDDYDIAAKEILSLYEQ 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,368,481
Number of Sequences: 5004
Number of extensions: 47868
Number of successful extensions: 145
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)