Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32424
(559 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0333 + 20333243-20333329,20335048-20335110,20335276-203353... 212 2e-55
05_03_0407 + 13582595-13582681,13583067-13583129,13583289-135833... 210 4e-55
03_02_0544 - 9362615-9362674,9362783-9362857,9362934-9363144,936... 206 7e-54
07_01_1091 - 10015180-10015236,10015705-10015779,10015874-100161... 194 5e-50
01_01_1165 - 9267891-9268145,9268395-9268510,9268991-9269127,926... 39 0.003
02_01_0206 + 1388149-1388330,1388527-1388629,1388896-1388964,138... 31 0.82
08_02_0456 - 17362080-17364156,17364853-17364942,17372615-173733... 29 1.9
11_01_0151 - 1263237-1263406,1267405-1267646,1267681-1267781,126... 29 2.5
08_01_1077 - 11027732-11027839,11028346-11028477,11029722-110298... 29 2.5
02_04_0468 - 23172561-23174201 29 3.3
07_03_0288 + 16285485-16285721,16285811-16286184,16286499-162868... 28 4.4
>05_04_0333 +
20333243-20333329,20335048-20335110,20335276-20335359,
20335720-20335827,20335969-20336141,20337135-20337246,
20337468-20337548,20337635-20337697,20337779-20337880,
20338070-20338194,20338317-20338527,20338625-20338699,
20338990-20339043
Length = 445
Score = 212 bits (517), Expect = 2e-55
Identities = 102/186 (54%), Positives = 129/186 (69%), Gaps = 1/186 (0%)
Frame = +2
Query: 2 RDWNVDLIPKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKVPVDQKEALAS 181
RD+NVD++PKF+MANG LV+ LIHT VT+YL FK+++GSYV+ GKI KVP EAL S
Sbjct: 69 RDYNVDMVPKFMMANGTLVRTLIHTDVTKYLSFKAVDGSYVFSKGKIHKVPATDMEALKS 128
Query: 182 DLMGMFEKRRFRNFLIYVQDFQEEDAKTWKDFDPSTANMQSLYDKFGLDRNTQDFTGHAL 361
LMG+FEKRR RNF IYVQD+ E D KT + D +T + L K+GL +T DF GHAL
Sbjct: 129 PLMGLFEKRRARNFFIYVQDYDEADPKTHQGLDLTTMTTRELIAKYGLSDDTVDFIGHAL 188
Query: 362 ALYLDDNYLQQPAXXTIRRIKLYSDSLAK-XXXXXXXXXXXXXXXXXXXFARLSAIYGGT 538
AL+ DD YL +PA T++R+KLY++SLA+ FARLSA+YGGT
Sbjct: 189 ALHRDDRYLNEPAIDTVKRMKLYAESLARFQGGSPYIYPLYGLGELPQGFARLSAVYGGT 248
Query: 539 YMLDKP 556
YML+KP
Sbjct: 249 YMLNKP 254
>05_03_0407 +
13582595-13582681,13583067-13583129,13583289-13583372,
13583757-13583864,13584018-13584190,13585190-13585301,
13585424-13585504,13585611-13585673,13585764-13585865,
13586063-13586187,13586316-13586526,13586614-13586688,
13586950-13587003
Length = 445
Score = 210 bits (514), Expect = 4e-55
Identities = 101/186 (54%), Positives = 129/186 (69%), Gaps = 1/186 (0%)
Frame = +2
Query: 2 RDWNVDLIPKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKVPVDQKEALAS 181
+D+NVD++PKF+MANG LV+ LIHT VT+YL FK+++GSYV+ GKI KVP EAL S
Sbjct: 69 KDYNVDMVPKFMMANGTLVRTLIHTDVTKYLSFKAVDGSYVFSKGKIHKVPATDMEALKS 128
Query: 182 DLMGMFEKRRFRNFLIYVQDFQEEDAKTWKDFDPSTANMQSLYDKFGLDRNTQDFTGHAL 361
LMG+FEKRR RNF IYVQD+ E D KT + D +T + L K+GL +T DF GHAL
Sbjct: 129 PLMGLFEKRRARNFFIYVQDYNEADPKTHQGLDLTTMTTRELIAKYGLSDDTVDFIGHAL 188
Query: 362 ALYLDDNYLQQPAXXTIRRIKLYSDSLAK-XXXXXXXXXXXXXXXXXXXFARLSAIYGGT 538
AL+ DD YL +PA T++R+KLY++SLA+ FARLSA+YGGT
Sbjct: 189 ALHRDDRYLNEPAIDTVKRMKLYAESLARFQGGSPYIYPLYGLGELPQGFARLSAVYGGT 248
Query: 539 YMLDKP 556
YML+KP
Sbjct: 249 YMLNKP 254
>03_02_0544 -
9362615-9362674,9362783-9362857,9362934-9363144,
9363279-9363403,9363492-9363593,9363676-9363738,
9363817-9363897,9364248-9364359,9364454-9364626,
9364722-9364829,9364909-9364992,9365131-9365193,
9365652-9365738
Length = 447
Score = 206 bits (504), Expect = 7e-54
Identities = 96/185 (51%), Positives = 131/185 (70%), Gaps = 1/185 (0%)
Frame = +2
Query: 2 RDWNVDLIPKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKVPVDQKEALAS 181
+++NVD++PKF+MANG LV++LIHT VT+YL FK+++GS+VY GKI KVP EAL S
Sbjct: 69 KEYNVDMVPKFMMANGALVRVLIHTSVTKYLNFKAVDGSFVYNNGKIHKVPATDVEALKS 128
Query: 182 DLMGMFEKRRFRNFLIYVQDFQEEDAKTWKDFDPSTANMQSLYDKFGLDRNTQDFTGHAL 361
+LMG+FEKRR R F IYVQD++E+D K+ + D + + K+GL+ +T DF GHAL
Sbjct: 129 NLMGLFEKRRARKFFIYVQDYEEDDPKSHEGLDLHKVTTREVISKYGLEDDTVDFIGHAL 188
Query: 362 ALYLDDNYLQQPAXXTIRRIKLYSDSLAK-XXXXXXXXXXXXXXXXXXXFARLSAIYGGT 538
AL+ DDNYL +PA T++R+KLY++SLA+ FARLSA+YGGT
Sbjct: 189 ALHRDDNYLDEPAIDTVKRMKLYAESLARFQGGSPYIYPLYGLAELPQAFARLSAVYGGT 248
Query: 539 YMLDK 553
YML+K
Sbjct: 249 YMLNK 253
>07_01_1091 -
10015180-10015236,10015705-10015779,10015874-10016149,
10016204-10016332,10017070-10017171,10017626-10017688,
10017776-10017856,10018218-10018314,10019064-10019236,
10019327-10019434,10019706-10019789,10019985-10020047,
10020483-10020569
Length = 464
Score = 194 bits (472), Expect = 5e-50
Identities = 96/186 (51%), Positives = 125/186 (67%), Gaps = 1/186 (0%)
Frame = +2
Query: 2 RDWNVDLIPKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKVPVDQKEALAS 181
RD+NVD+IPKF+MANG LV++LIHTGVT+YL FK+++GSYV+ GKI KVP EAL S
Sbjct: 69 RDYNVDMIPKFMMANGTLVRVLIHTGVTKYLSFKAVDGSYVFNKGKIHKVPSTDMEALKS 128
Query: 182 DLMGMFEKRRFRNFLIYVQDFQEEDAKTWKDFDPSTANMQSLYDKFGLDRNTQDFTGHAL 361
LMG+FEKRR F ++VQD++E D T K +D + + L K+GLD NT DF GHA+
Sbjct: 129 PLMGLFEKRRAGKFFLFVQDYKENDPSTHKGYDLNKMTTKELISKYGLDDNTIDFIGHAV 188
Query: 362 ALYLDDNYLQQPAXXTIRRIKLYSDSLAK-XXXXXXXXXXXXXXXXXXXFARLSAIYGGT 538
AL+ +DNYL +PA T LY++S+ + FARLSA+YGGT
Sbjct: 189 ALHKEDNYLTEPAIDT-----LYAESVGRFQGGSPYIYPLYGLGELPQGFARLSAVYGGT 243
Query: 539 YMLDKP 556
YML+KP
Sbjct: 244 YMLNKP 249
>01_01_1165 -
9267891-9268145,9268395-9268510,9268991-9269127,
9269645-9269808,9269892-9269972,9270783-9270962,
9271489-9271929,9273234-9273344,9274355-9274463,
9274618-9274643,9274823-9274903,9275013-9275211,
9275374-9275449,9275553-9275769,9276117-9276155,
9276684-9276783,9276962-9277084,9277171-9277895
Length = 1059
Score = 38.7 bits (86), Expect = 0.003
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Frame = +2
Query: 2 RDWNVDLI-PKFLMANGLLVKLLIHTGVTRYLEFKSIE-GSYVYKGGKISKVPVDQKEAL 175
R + DL+ P+ L V LL+ +G + ++EFKS+E G+ +Y G + VP D ++A+
Sbjct: 116 RRFTADLVGPRLLYCADEAVDLLLRSGGSHHVEFKSVEGGTLLYWDGDLYPVP-DSRQAI 174
Query: 176 ASD-LMGMFEKRRFRNFLIYVQ 238
D + + EK F VQ
Sbjct: 175 FKDTTLQLREKNLLFRFFKLVQ 196
>02_01_0206 +
1388149-1388330,1388527-1388629,1388896-1388964,
1389684-1389803,1390352-1390482,1390840-1390881,
1390961-1391138,1391241-1391319,1391441-1391610,
1392503-1392629,1392731-1392846,1392926-1393033,
1393118-1393180,1393283-1393456,1393814-1393978
Length = 608
Score = 30.7 bits (66), Expect = 0.82
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Frame = +2
Query: 41 ANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKVPVDQKEALASDLMGMFEKRRFRN 220
A + KLL+ R +++ +V +GG+ S++PVD ++ S++ + RF+
Sbjct: 378 AKDFVKKLLVKNPRARLTAAQALSHPWVREGGEASEIPVD--ISVLSNMRQFVKYSRFKQ 435
Query: 221 FLI--YVQDFQEEDAKTWKD-FD 280
F + +EE+ KD FD
Sbjct: 436 FALRALASTLKEEELADLKDQFD 458
>08_02_0456 -
17362080-17364156,17364853-17364942,17372615-17373318,
17373421-17373451,17374366-17374448,17374517-17374640,
17376427-17376560
Length = 1080
Score = 29.5 bits (63), Expect = 1.9
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Frame = +2
Query: 26 PKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKVPVD-QKEALASDLMGMFE 202
P+++ G + +H + ++ KSIE ++V G I VP+D QK+ L+ E
Sbjct: 597 PRYIGKFGEVKSCRVHDTILDFIRSKSIEENFVTLLG-IPNVPIDRQKKVRRLSLLVNTE 655
Query: 203 K---RRFRNFLIYVQDFQEEDAKTWKD 274
+ N + YV D +E+D+ +D
Sbjct: 656 EYYSSLEENNIKYVLDKKEDDSNEQED 682
>11_01_0151 -
1263237-1263406,1267405-1267646,1267681-1267781,
1268010-1268780
Length = 427
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/66 (22%), Positives = 35/66 (53%)
Frame = +2
Query: 77 GVTRYLEFKSIEGSYVYKGGKISKVPVDQKEALASDLMGMFEKRRFRNFLIYVQDFQEED 256
G+ LE ++ +++ G + + + + +A D + K+R RN L+YV+D +
Sbjct: 53 GIEHGLEL--VKQRIIWRVGNGDNIKIWRHKWVAHDDRLITLKKRVRNRLMYVKDLMDAG 110
Query: 257 AKTWKD 274
+++W +
Sbjct: 111 SRSWNE 116
>08_01_1077 -
11027732-11027839,11028346-11028477,11029722-11029802,
11029911-11030063,11030167-11030281,11030282-11030927,
11031409-11031613,11031696-11031758
Length = 500
Score = 29.1 bits (62), Expect = 2.5
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +2
Query: 257 AKTWKDFDPSTANMQSLYDKFGLDR-NTQDFTGHAL 361
+K WK+ S + DKFG+DR +F H L
Sbjct: 137 SKRWKELSASAPCLDICVDKFGMDRVRFSEFVAHLL 172
>02_04_0468 - 23172561-23174201
Length = 546
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = +2
Query: 149 VPVDQKEALASDLMGMFEKRRFRNFLIYVQDFQEEDAKTWKD 274
VPVD KEALA D++ R R +IY D +W D
Sbjct: 380 VPVDFKEALADDVLPDGTPVRARQRVIYYTYAIGRDPASWGD 421
>07_03_0288 +
16285485-16285721,16285811-16286184,16286499-16286892,
16286917-16287806,16291189-16291446,16291518-16291628,
16291697-16291775,16291880-16291972,16292095-16292280
Length = 873
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +2
Query: 110 EGSYVYKGGKISKVPVDQKEALASDLMGMFEKRRFRNFLIY 232
EG V+K K+ +V V K + G F R R+ LIY
Sbjct: 217 EGDVVFKDQKLKEVAVKMKNIVMQQQAGTFVPDRDRDELIY 257
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,019,344
Number of Sequences: 37544
Number of extensions: 298735
Number of successful extensions: 710
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -