Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32422
         (778 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe...    29   0.98 
SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated |Schizosaccharom...    25   9.2  

>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 580

 Score = 28.7 bits (61), Expect = 0.98
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -1

Query: 511 RVVSIMSTTRKKPKKTLRAIEQFLGLNINFKHNKHLQVLMDF 386
           RV  I    R +   T R + +F GL++    N+H   +M+F
Sbjct: 322 RVFEIGPVFRAEDSNTYRHMTEFTGLDLEMAFNEHYHEVMEF 363


>SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
 Frame = +3

Query: 474 GFLRVVDIIETTLTV*SRNSDVTTSYNSMEPAARTKKHYSLRRSI*GLK-CKRERATSDK 650
           GF++ +  I++++ + +  +        + P+A  KKH  L  SI  ++  + E     +
Sbjct: 110 GFIKSLLEIDSSVVIYNTENPDNPKTKQVMPSAEPKKHVKLNSSISSIRFTQHEFEAESE 169

Query: 651 EAQSASAFGSVRHL-SLSYLSERCIR 725
           +    S  G + +L S  +L E  +R
Sbjct: 170 KIIHHSLKGDIEYLPSFKFLLEIKVR 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,129,623
Number of Sequences: 5004
Number of extensions: 62748
Number of successful extensions: 147
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)