Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32422
         (778 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0036 + 12635480-12636422,12636674-12637164                       28   7.2  
10_08_0680 - 19846481-19846767,19847192-19847379,19847467-198476...    28   7.2  
09_04_0651 - 19224403-19225032                                         28   9.5  
06_03_0091 - 16515330-16515548,16515669-16515779,16517483-165175...    28   9.5  

>11_04_0036 + 12635480-12636422,12636674-12637164
          Length = 477

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 342 MIWIFKIFPYFYWHRKSIRTC-KCLLCLKLMFNPKNCSMALR 464
           ++W  K   +FY +  +I TC KC     LMF P+  S ALR
Sbjct: 93  LLWNAK--QWFYANCATINTCDKCSTAFLLMFFPRGKSNALR 132


>10_08_0680 -
           19846481-19846767,19847192-19847379,19847467-19847666,
           19847799-19848060,19848652-19848758
          Length = 347

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
 Frame = -2

Query: 744 MYSSCPRGCIAHSSTRETDVERCRTRRPIVPLCRSWRA--LACTSSLKWNASMSNVFSCV 571
           +Y +C   C    S RET V  C+      P  +SW A         +WN      + C+
Sbjct: 34  LYRACVDECEKTGSLRETSVRHCQVPTDDHPADKSWYAHEPLYLQWKEWNCKSECRYHCM 93

Query: 570 QPAPSSYKTL 541
               S  + L
Sbjct: 94  MERESEREQL 103


>09_04_0651 - 19224403-19225032
          Length = 209

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = -3

Query: 740 IAAVHADASLTQVRERQMSNAAERGGRLCLFVARGALSLALQASNGTPQ*VMFFRACSRL 561
           +A  HA A+     +     AA  GGR C+ +ARG  +  +   +       F RAC+R 
Sbjct: 134 VADDHAAAAEAGTNKGFAGAAAGVGGRCCVCMARGKAAAFIPCGH------TFCRACARE 187

Query: 560 HRVIR-RC 540
            RV R RC
Sbjct: 188 LRVGRGRC 195


>06_03_0091 -
           16515330-16515548,16515669-16515779,16517483-16517524,
           16518067-16518181,16518820-16518914,16519916-16520015,
           16521169-16521264,16522276-16522349,16524581-16524629,
           16525414-16525483,16525553-16525652,16525721-16525779,
           16526633-16526684,16527199-16527405
          Length = 462

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/45 (26%), Positives = 26/45 (57%)
 Frame = +3

Query: 642 SDKEAQSASAFGSVRHLSLSYLSERCIRVDSCYT*YIYMFYMVFV 776
           SD   +++SA+ +   + LSY   +C+  +S  +  I  FY++++
Sbjct: 194 SDSAEKTSSAWDTPNSIELSYSDMKCLEPESLLSSPILNFYIMYL 238


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,889,547
Number of Sequences: 37544
Number of extensions: 360787
Number of successful extensions: 869
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)