Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32422
         (778 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   2.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.2  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          23   4.2  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   4.2  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   4.2  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   5.5  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   7.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.7  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -2

Query: 114 VCVPKSYWHVVCWYNHL-CP*DYLSTTLY 31
           +CVP + +  VC Y+H   P D L+ T++
Sbjct: 148 LCVPFTTYTPVCEYDHTWWPYDILNCTIH 176


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = -2

Query: 720  CIAH-SSTRETDVERCRTRRPIV 655
            C  H +  +ETD + C T RP+V
Sbjct: 1687 CTIHRTQVKETDDKICFTMRPVV 1709


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 346 IIQCTNKWISYNRLKRFRLHQYP 278
           +I    KW+ YN +KR R    P
Sbjct: 28  LITGDEKWVVYNNIKRKRSWSRP 50


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 346 IIQCTNKWISYNRLKRFRLHQYP 278
           +I    KW+ YN +KR R    P
Sbjct: 149 LITGDEKWVVYNNIKRKRSWSRP 171


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 518 NRKSSFNYVYNS*KTEENSKSHRAILR 438
           N + +F+Y+  S K  ENS   RA ++
Sbjct: 614 NEEITFDYMCQSSKNSENSIMQRASMK 640


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +3

Query: 24  GRNIR*YLNNLMGTNDYTNTQHANMI*VHKLTTLLTFRGMYLHK*LSRKLF 176
           GR++R +LN L   ++Y    +  M     +    T +G+ LH    R+ F
Sbjct: 90  GRHVRDFLNGLDNLHEYLKFSYPRMRAPSFICENETRQGLTLHYRSKRRGF 140


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +3

Query: 264 NVNTDGY*CNRKRFKRL*LIHLLVHCMIWI 353
           NVN       R  F  L L++  VH MIWI
Sbjct: 35  NVNLLKNRTGRYMFTYLHLLYQDVHVMIWI 64


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 162  SRKLFYRLFSYLH*QINVNIDQKPIDLSL 248
            S   FY  F Y   + + N DQKP +  L
Sbjct: 954  SSSSFYSSFLYKSSESSCNPDQKPTEYLL 982


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,011
Number of Sequences: 438
Number of extensions: 4420
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)