Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32399
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    26   5.1  
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    25   6.7  
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    25   6.7  
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos...    25   6.7  

>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1250

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
 Frame = -3

Query: 289 GCELVRPF*Q*KNKQTNLKMFTFIGTYNSFR----RYRRGMLVKTLT 161
           GC +  P     NK+T+L +++    YNS      RY  G+  + +T
Sbjct: 435 GCSIESPANLFPNKETSLSLYSSFSEYNSLEVGVDRYELGLDPQNIT 481


>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +1

Query: 448 WWYLSMPLHMLLHEVILLPWKSLLRITLKNGTRLWDSNPGSXVSLYTTSYRHNGL 612
           W ++S  L  ++H VI + W+  L++ ++      D+   +    Y TS  H GL
Sbjct: 650 WHFVSCHLAEMIHFVIEISWQE-LQLAMEKPNATLDTYIEAH-EKYVTSITHKGL 702


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 188 AISSKRIIGTYKSEHFEVCLFV 253
           A+SSK+I  T K+E  E CL +
Sbjct: 500 ALSSKKITDTEKNELLETCLSI 521


>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 327 LKRKFHHPT*DMSSKVSYLQH 389
           L R F HP  D + KVS+ +H
Sbjct: 180 LTRVFRHPPPDFAGKVSFKEH 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,637,814
Number of Sequences: 5004
Number of extensions: 56178
Number of successful extensions: 102
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)