Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32399
         (621 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0382 + 17470508-17470807,17471449-17474517                       29   2.3  
05_03_0134 + 8790409-8790421,8790716-8791023,8791836-8792153,879...    29   3.0  
08_02_0243 - 14708055-14708416,14708487-14709324,14709482-147103...    28   6.9  
06_03_0769 + 24448483-24448825,24449228-24449305,24450812-244508...    28   6.9  
05_05_0065 - 22069798-22069890,22070878-22071160,22071240-220713...    28   6.9  
02_01_0417 - 3048519-3048710,3048903-3050600,3050622-3050909,305...    28   6.9  

>07_03_0382 + 17470508-17470807,17471449-17474517
          Length = 1122

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +2

Query: 65  CLKIHCLFVYYCKLFKNTLPICIPLQIISLKACQCFYEHTAAIS 196
           CLK   +  YY + F N LP    LQ + L  C+ F EH   +S
Sbjct: 756 CLKSLKIVSYYARHFPNWLPCLTNLQRLVLSDCK-FCEHMPDLS 798


>05_03_0134 +
           8790409-8790421,8790716-8791023,8791836-8792153,
           8793021-8793212,8793383-8793618,8793696-8793953,
           8794237-8794315,8797728-8797895
          Length = 523

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 277 RAHSPLSVKWLPESIAI*NVNSTTQLET 360
           + H+P S KW    +AI  V+ T QLET
Sbjct: 204 KKHNPRSRKWQQSELAIQEVSPTQQLET 231


>08_02_0243 -
           14708055-14708416,14708487-14709324,14709482-14710323,
           14710466-14710520,14711535-14711549,14713030-14713033,
           14713340-14713424,14714045-14714084
          Length = 746

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 18/47 (38%), Positives = 21/47 (44%)
 Frame = +2

Query: 161 CQCFYEHTAAISSKRIIGTYKSEHFEVCLFVFLLLKRTDELTAHLVL 301
           C   Y H A  S KR I   K EH  + + V   L+   E   HLVL
Sbjct: 527 CLLVYHHDACRSVKRDIYR-KLEHLRILILVGAGLQSIPESVGHLVL 572


>06_03_0769 +
           24448483-24448825,24449228-24449305,24450812-24450855,
           24451299-24451362,24451543-24451634,24451988-24452234,
           24452632-24452775,24452905-24453011,24453096-24453149,
           24453221-24453304,24454448-24454611,24455003-24455147
          Length = 521

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -2

Query: 566 PGFESHRRVPFFNVIRNNDFHGKRITSCNSMCNGIDRYHHPA 441
           P F S+  +P  +V   +D HG  + S     N +   HHP+
Sbjct: 267 PSFPSYSPIPRLSVSEISDDHGGGVVSPQRKLNHLLSDHHPS 308


>05_05_0065 -
           22069798-22069890,22070878-22071160,22071240-22071335,
           22071456-22071558,22071633-22071693,22071816-22071887,
           22072315-22072383,22072459-22072482,22073278-22073316,
           22073862-22073951,22074063-22074095
          Length = 320

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +3

Query: 9   HYHYDVT-EWIFLKLVVCFFV*KYIAYLYTTANCLKIH-CLFVYHCK**V*KLVSVFTSI 182
           HY  DV   W  + LVV F   K   Y++ T   L+++  L+  H    V   V +FT +
Sbjct: 187 HYSVDVVVAWYTVNLVVFFVDNKLPGYIFVTFVALRLYRDLYGKHF---VTSFVEIFTEM 243

Query: 183 PRR 191
           P R
Sbjct: 244 PDR 246


>02_01_0417 -
           3048519-3048710,3048903-3050600,3050622-3050909,
           3052308-3052377,3052417-3052668,3053235-3055297
          Length = 1520

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 101 KLFKNTLPICIPLQIISLKACQCFYEHTAAISSKRI 208
           K+  N+ PI  PL + +  AC CF  HTA    K +
Sbjct: 527 KVADNSDPIAFPLPVYA-GACLCFQYHTATALPKML 561


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,360,427
Number of Sequences: 37544
Number of extensions: 338335
Number of successful extensions: 630
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)