Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32397
(460 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha... 145 2e-36
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p... 143 1e-35
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz... 38 0.001
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 29 0.34
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 26 3.2
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe... 25 4.2
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr... 25 5.6
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 25 5.6
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd... 24 9.7
>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 203
Score = 145 bits (352), Expect = 2e-36
Identities = 76/129 (58%), Positives = 95/129 (73%)
Frame = +2
Query: 74 AGSVVVETMSLPQAADIPEIKLFGRWSCYXVQVSDMSLQDYISVKEKYAKYLPHSXGRYA 253
A S++ + +SL + IKLF ++ V+V D+SL DYI++ + LPH+ GR+
Sbjct: 2 AASIIPKEVSLDETG---HIKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQ 56
Query: 254 HKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAII 433
KRFRKA+C IVERLTNSLMM+GRNNGKKL+A RIVKHAFEII LLT +NPLQVLV A+
Sbjct: 57 TKRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVA 116
Query: 434 NSGPREDST 460
GPREDST
Sbjct: 117 ACGPREDST 125
>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 143 bits (346), Expect = 1e-35
Identities = 76/125 (60%), Positives = 91/125 (72%), Gaps = 3/125 (2%)
Frame = +2
Query: 95 TMSLPQAADIPE---IKLFGRWSCYXVQVSDMSLQDYISVKEKYAKYLPHSXGRYAHKRF 265
T SL + E IKLF ++ V+V D+SL DYI++ + LPH+ GR+ KRF
Sbjct: 3 TSSLTPGVSLDENGSIKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQTKRF 60
Query: 266 RKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGP 445
RKA+C IVERLTNSLMM+GRNNGKKL+A RIVKHAFEII LLT +NPLQVLV A+ GP
Sbjct: 61 RKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVAACGP 120
Query: 446 REDST 460
REDST
Sbjct: 121 REDST 125
>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
S7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 37.5 bits (83), Expect = 0.001
Identities = 23/53 (43%), Positives = 28/53 (52%)
Frame = +2
Query: 287 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGP 445
V+ L N +M +GKK A +IV A II TGENP+ VL AI P
Sbjct: 126 VQHLVNLIM----RDGKKAKAEKIVATALSIIQKETGENPIDVLKQAIAEISP 174
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 29.1 bits (62), Expect = 0.34
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +1
Query: 346 GRTYCQTCV*NYSLVNWRKPSASTRDCHYQLWT 444
G TYC C L+NW K S S C +L+T
Sbjct: 101 GHTYCYEC-----LLNWLKESKSCPTCRQKLYT 128
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 25.8 bits (54), Expect = 3.2
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +1
Query: 295 PYKLSNDARSEQWQKTDGRTYCQTCV*NYSLVNWRKPSAST 417
PYK+ + + W + G+TY + + + L R+ +AST
Sbjct: 138 PYKIVEHSNGDAWLEARGKTYSPSQIGGFILSKMRE-TAST 177
>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 25.4 bits (53), Expect = 4.2
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 110 QAADIPEIKLFGRWSCYXVQVSDMSLQDYISVKEKYAKYLPHSXGRYA 253
+ ADI + FGR +++++ + I+V+EKYAK P R A
Sbjct: 7 KVADI-SLAAFGRKE---LEIAENEMPGLIAVREKYAKSQPLKGARIA 50
>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 131
Score = 25.0 bits (52), Expect = 5.6
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +3
Query: 99 CLYHKPPTFLKSSFS 143
C H P TFL SSFS
Sbjct: 117 CFIHPPITFLSSSFS 131
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 25.0 bits (52), Expect = 5.6
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +2
Query: 245 RYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIH 385
+Y KR A+ +V R H R N KL + + H F ++H
Sbjct: 390 KYPRKRQEIAE--LVIRCLQDRSSHVRRNAIKLFSKLLTTHPFSVMH 434
>SPBC2G2.08 |ade9||C-1-
tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 969
Score = 24.2 bits (50), Expect = 9.7
Identities = 7/22 (31%), Positives = 17/22 (77%)
Frame = +2
Query: 173 SDMSLQDYISVKEKYAKYLPHS 238
SDM ++ + ++K +Y+K +P++
Sbjct: 706 SDMGMEKFFNIKCRYSKLVPNT 727
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,928,206
Number of Sequences: 5004
Number of extensions: 37387
Number of successful extensions: 96
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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