Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32397
(460 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0317 - 16328558-16328612,16328698-16328901,16329794-163300... 180 4e-46
01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419 175 2e-44
07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-57... 28 3.1
09_04_0551 - 18488584-18490017 28 4.2
07_03_1503 + 27017933-27018063,27019668-27019727,27019996-270201... 27 5.5
11_06_0226 + 21461174-21462018,21462508-21464439,21464746-21464845 27 7.3
06_02_0103 - 11829343-11829699,11831560-11831826,11832239-118325... 27 7.3
05_05_0116 - 22496535-22496576,22496974-22497058,22497468-224975... 27 7.3
05_06_0119 + 25742277-25742434,25742976-25743061,25743146-257432... 27 9.6
02_05_0880 + 32466538-32467083,32467333-32467644,32467731-324682... 27 9.6
>11_04_0317 -
16328558-16328612,16328698-16328901,16329794-16330065,
16330152-16330220
Length = 199
Score = 180 bits (439), Expect = 4e-46
Identities = 85/112 (75%), Positives = 97/112 (86%), Gaps = 1/112 (0%)
Frame = +2
Query: 128 EIKLFGRWSCYXVQVSDMSLQDYISVKE-KYAKYLPHSXGRYAHKRFRKAQCPIVERLTN 304
E+KLF RWS VQV+D+SL DY++V K+A YLPH+ GRY+ KRFRKAQCPIVERLTN
Sbjct: 10 EVKLFSRWSFEDVQVNDISLADYLAVNPTKHATYLPHTAGRYSAKRFRKAQCPIVERLTN 69
Query: 305 SLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDST 460
SLMMHGRNNGKK+MAVRIVKHA EIIHLLT NP+QV+V AIINSGPRED+T
Sbjct: 70 SLMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDAT 121
>01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419
Length = 200
Score = 175 bits (425), Expect = 2e-44
Identities = 82/111 (73%), Positives = 95/111 (85%), Gaps = 1/111 (0%)
Frame = +2
Query: 131 IKLFGRWSCYXVQVSDMSLQDYISVKE-KYAKYLPHSXGRYAHKRFRKAQCPIVERLTNS 307
+KLF WS VQV+D+SL DY++V K+A YLPH+ GRY+ KRFRKAQCP+VERLTNS
Sbjct: 12 VKLFNCWSFEDVQVNDISLADYLAVSSTKHATYLPHTAGRYSAKRFRKAQCPLVERLTNS 71
Query: 308 LMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDST 460
LMMHGRNNGKK+MAVRIVKHA EIIHLLT NP+QV+V AIINSGPRED+T
Sbjct: 72 LMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDAT 122
>07_01_0077 +
566895-567127,567207-567331,571204-571340,571437-571542,
571635-571885,572018-572128,572209-572320,572626-572716,
573168-573507,573678-573900,573946-574204,574274-574481,
574572-574622,574712-574870,574956-575120,575322-575399,
575732-576031,576107-576259,576871-576918,577019-577188,
577738-577852,578462-578623,578789-578893,578969-579199,
579277-579410,579484-579738,579822-580110,580214-580306,
580395-580520,580646-580897
Length = 1693
Score = 28.3 bits (60), Expect = 3.1
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +3
Query: 69 PXQAAWLWKPCLYHKPPTF 125
P Q +WLW+ L H P F
Sbjct: 90 PSQCSWLWREVLKHNPDAF 108
>09_04_0551 - 18488584-18490017
Length = 477
Score = 27.9 bits (59), Expect = 4.2
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -3
Query: 119 RRLVVKTWFPQPRCLXRHTSSFQFSLGHDW 30
R LVV TW PQP L RH ++ F W
Sbjct: 344 RGLVVNTWVPQPSVL-RHRATAAFVTHCGW 372
>07_03_1503 + 27017933-27018063,27019668-27019727,27019996-27020101,
27020254-27020325,27021008-27021061,27021707-27021856,
27022206-27022547,27022651-27024684,27024706-27024947,
27025658-27026235,27026329-27028183,27028533-27028851,
27028980-27029417
Length = 2126
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 287 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTG 397
+ L ++HG N ++++AV +K +I+HLL G
Sbjct: 1328 ISALVVGSVIHGVVNIERMVAVLKIKDGLDILHLLRG 1364
>11_06_0226 + 21461174-21462018,21462508-21464439,21464746-21464845
Length = 958
Score = 27.1 bits (57), Expect = 7.3
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = +1
Query: 37 WPRENWNDDVCRXRQRGCGNHVFTTSR 117
W WN C CG+ V TT+R
Sbjct: 291 WDTSKWNIIKCALIDSNCGSRVITTTR 317
>06_02_0103 -
11829343-11829699,11831560-11831826,11832239-11832559,
11833783-11833844,11835413-11835446,11835539-11835619
Length = 373
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +2
Query: 104 LPQAADIPEIKLFGRWSCYXVQVSDMSLQDYISVKEKYAKYLP 232
L + +D P+ +L W+ +SDM+L+ IS ++ + Y+P
Sbjct: 227 LVKRSDKPDTELIQPWTPAVTALSDMALRGVISKEKLDSFYIP 269
>05_05_0116 -
22496535-22496576,22496974-22497058,22497468-22497545,
22497656-22497803,22498612-22498771,22499056-22499058
Length = 171
Score = 27.1 bits (57), Expect = 7.3
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = -1
Query: 217 VLLFNGNVVLQRHIRDLHXVATPSAEK 137
+++F+G++V+ + I+DLH T E+
Sbjct: 57 IVMFDGHIVVYKFIQDLHFFVTGGEEE 83
>05_06_0119 +
25742277-25742434,25742976-25743061,25743146-25743223,
25743919-25744031,25744094-25744171,25744941-25744949,
25744981-25745082,25745165-25745714,25745941-25746146,
25746868-25747031,25747157-25747310
Length = 565
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 103 RHGFHNHAACXGIRRHSSSPSAMIGTFPI 17
R F A+C +R+H+SSP + PI
Sbjct: 226 RDAFAQLASCNSLRQHTSSPVISLDVSPI 254
>02_05_0880 +
32466538-32467083,32467333-32467644,32467731-32468201,
32468481-32469246,32469332-32469774
Length = 845
Score = 26.6 bits (56), Expect = 9.6
Identities = 8/27 (29%), Positives = 13/27 (48%)
Frame = +1
Query: 292 APYKLSNDARSEQWQKTDGRTYCQTCV 372
AP+ + + W T R +C+ CV
Sbjct: 178 APHGMKEELDKADWSSTHNRIFCELCV 204
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,879,187
Number of Sequences: 37544
Number of extensions: 253199
Number of successful extensions: 629
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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