Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32396
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces p...    70   3e-13
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    29   0.83 
SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar...    27   2.5  
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    26   5.8  
SPBC14C8.04 |||acetolactate synthase regulatory unit|Schizosacch...    26   5.8  

>SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 227

 Score = 70.1 bits (164), Expect = 3e-13
 Identities = 49/194 (25%), Positives = 92/194 (47%), Gaps = 1/194 (0%)
 Frame = +1

Query: 106 VQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXXXXXXX 285
           VQ ++  M++FI+Q                F +EK ++V++Q   I              
Sbjct: 8   VQAEMHKMVSFIKQEALEKAKEIHTLSEEEFQVEKAKIVREQCDAIDQTYDMKLKRASMA 67

Query: 286 XXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQALFQL 465
             I  SN+LN++RL++L  ++  + ++     K+L  + +    Y++ +  LIVQA+  L
Sbjct: 68  QKIAKSNVLNKSRLEILNSKQKVIDDIFSRVEKKLDGIEQKKDAYTKFMADLIVQAMELL 127

Query: 466 MEPTVTIRVRQTDKALVESLLGKAXTDYKNKIKK-DVVLESRHRELFCRPTPVVESNWLQ 642
            EP   +  RQ D  +V++ + KA    K+K    D  L++   + F   + +     + 
Sbjct: 128 GEPVGIVYSRQRDAEIVKAAIPKATEVLKSKNGSIDYELDAETDD-FLNDSVLGGVVLVG 186

Query: 643 PGGRIKISNTLESR 684
            GG+I++ NTL +R
Sbjct: 187 LGGKIRVDNTLRAR 200


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = -2

Query: 567 FLDLILVVCXGFSEQGLHQSLVGLTDADGDSGFHELEESLHNKCDQQL*VQFGV 406
           F++ ++V C    EQG    ++   D+  +SG HE+ + L N  DQQL  Q  +
Sbjct: 488 FINQLIVACEEL-EQGFDLDIL---DSLRESGIHEVIQLLRNFPDQQLEKQLNI 537


>SPBC215.10 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +1

Query: 349 DHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQALFQLMEP 474
           D   N L+EA+KRLA +P D     E+ +T  +   F+++ P
Sbjct: 181 DDDTNGLEEAKKRLAGIPSD-----EVALTQALPQTFEIIPP 217


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1076

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -2

Query: 630 RFHHRCRATKKFSVSTFQHNIFLDLILV 547
           RFH   +++ +F+V+  +H IF DL L+
Sbjct: 352 RFHWYPKSSTRFAVALSKHIIFFDLDLL 379


>SPBC14C8.04 |||acetolactate synthase regulatory
           unit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 289

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 9   PEPVINFLALYRPFFVLVVLKISSSHGAXRCRCSE-TDQAHD 131
           P+ V NFL+L RP+ VL   +  +S        +E T++A D
Sbjct: 236 PDRVDNFLSLLRPYGVLEACRTGTSAMTRAPHSNEVTEEAED 277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,551,007
Number of Sequences: 5004
Number of extensions: 46898
Number of successful extensions: 134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)