Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32396
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045642-4|AAK67210.1|  226|Caenorhabditis elegans Vacuolar h at...   128   4e-30
Z70208-6|CAA94138.1|  183|Caenorhabditis elegans Hypothetical pr...    28   5.4  

>AF045642-4|AAK67210.1|  226|Caenorhabditis elegans Vacuolar h
           atpase protein 8 protein.
          Length = 226

 Score =  128 bits (309), Expect = 4e-30
 Identities = 80/195 (41%), Positives = 102/195 (52%), Gaps = 2/195 (1%)
 Frame = +1

Query: 106 VQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXXXXXXX 285
           VQKQ++HMMAFIEQ                FNIEKGRLVQQQR KIM             
Sbjct: 8   VQKQLRHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQQQRQKIMEFFEKKEKQVELQ 67

Query: 286 XXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQALFQL 465
             IQ+SN LN  RL+ LK REDH+  VLDEAR  L+ +  D   Y  +L  L++Q L QL
Sbjct: 68  RKIQASNSLNAGRLRCLKAREDHIGAVLDEARSNLSRISGDAARYPAILKGLVMQGLLQL 127

Query: 466 MEPTVTIRVRQTDKALVESLLGKAXTDYKNK--IKKDVVLESRHRELFCRPTPVVESNWL 639
           +E  V +R R+ D  LVE LL +     + +      VVL+ ++   F            
Sbjct: 128 LEKEVVLRCREKDLRLVEQLLPECLDGLQKEWGSTTKVVLDKQN---FLPSESAGGVELS 184

Query: 640 QPGGRIKISNTLESR 684
              G+IK+S+TLESR
Sbjct: 185 ARAGKIKVSSTLESR 199


>Z70208-6|CAA94138.1|  183|Caenorhabditis elegans Hypothetical
           protein F54B11.6 protein.
          Length = 183

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 527 SEKPXQTTRIRSRKMLCWKVDTENFFVARHLWWNRTGCS 643
           SEK  +   +  +K  CW+ ++E  +   H  WN   CS
Sbjct: 109 SEKHQRELAVAKKKQWCWQCNSEAIY---HCCWNTAYCS 144


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,484,622
Number of Sequences: 27780
Number of extensions: 282000
Number of successful extensions: 817
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)