Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32395
         (512 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces pomb...    26   3.8  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    25   5.0  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    25   5.0  
SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomy...    25   6.7  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    25   8.8  
SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1 |Schizos...    25   8.8  

>SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -2

Query: 370 EDDVKSYTYFVNTSIGDWTTTNKFHHKIFN 281
           E D   +   +++++G WTTT +   +IF+
Sbjct: 67  EGDYMCFVQLIHSNLGSWTTTAQSTCRIFD 96


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +1

Query: 370 HNFPALLPVTWGRCNMLSPSILLYHTPFPRSLPFYTYRL 486
           H F   L +   RCN +   I +    FP  LPF  +R+
Sbjct: 661 HTFNRPLVLGQLRCNGVLEGIRITRAGFPNRLPFNDFRV 699


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +1

Query: 367 PHNFPALLPVTWGRCNMLSPSILLYHTPFPRSLPFYTYR 483
           PHN    L +   RCN +   I +  T FP  L +  +R
Sbjct: 672 PHNLDKSLVLHQLRCNGVLEGIRIAQTGFPNKLFYTEFR 710


>SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +1

Query: 430 ILLYHTPFPRSLPFYTYRLSRNPSIFS 510
           +L +H   PR  PFY  + + +P + +
Sbjct: 81  LLRWHAKLPRVQPFYAVKCNPDPKVLA 107


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +1

Query: 367 PHNFPALLPVTWGRCNMLSPSILLYHTPFPRSLPFYTYRLSRNPSI 504
           P N  A+   T+ + +  SP+  +Y    P S   +    SR+PS+
Sbjct: 345 PSNLDAINAKTYFQSSSNSPAPYVYRNNLPPSATSFQPSSSRSPSV 390


>SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 293

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 343 FVNTSIGDWTTTNKFHHKIFNPTSQY 266
           +V  + G W +T + HH  F  T+ Y
Sbjct: 71  YVEQNFGKWLSTTRLHH-YFTVTNSY 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,231,099
Number of Sequences: 5004
Number of extensions: 46065
Number of successful extensions: 107
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)