Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32394
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    26   4.0  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    26   4.0  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    26   5.3  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    25   9.3  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   9.3  

>SPBC19C7.08c |||leucine carboxyl
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 681

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 552 KHVITDSPDPCTGLFRYLK 608
           K+ + +SPDPC    RY+K
Sbjct: 325 KYDLVESPDPCMQYIRYVK 343


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 625 EDGDRCLRYLKSPVQGSGESVMT 557
           +DGD CLRY     QG  E+ +T
Sbjct: 39  DDGDTCLRYTTIYSQGEYETTIT 61


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -2

Query: 517 RIRYVITGGHDKRNSHVVPXFSSGSMMPTVDTYSLKRNNN 398
           R+R + T G  K +   +  FS+    P + T  +KRN N
Sbjct: 590 RVRVLTTDGFKKYHGFDMTDFSASDDDPVLITTKIKRNAN 629


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 85  GGRAHSPPGVQWLLEPIDIHN 23
           GG  H P  V WLL P DI++
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +2

Query: 53   LNTRWTVSSSTHLNLNPPISN 115
            LN+   ++SST LN +PPI++
Sbjct: 1638 LNSSTPITSSTALNTSPPITS 1658


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,505,951
Number of Sequences: 5004
Number of extensions: 46691
Number of successful extensions: 204
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)