Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32394
         (644 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48795-6|CAA88730.1|  203|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z97190-2|CAM06586.1|  650|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z66564-7|CAA91472.2|  650|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z48795-6|CAA88730.1|  203|Caenorhabditis elegans Hypothetical
           protein R05H5.7 protein.
          Length = 203

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = -2

Query: 541 RPVYHSVYRIRYVITGGHDKRNSHVVPXFSSGSMMPT--VDTYSLKRNNNTVLQQSE 377
           RP  + VYR+R+     HD R   V P  SS    P   V  ++   N N+++  +E
Sbjct: 39  RPECNGVYRLRFAKHKAHDHR-PRVTPQLSSVPWTPAAPVPRFNSFVNTNSIIISNE 94


>Z97190-2|CAM06586.1|  650|Caenorhabditis elegans Hypothetical
           protein F52D10.6 protein.
          Length = 650

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 614 PVLEVPKKPRARIGRIRND 558
           P+L+V KKPR R+ R  ND
Sbjct: 48  PILKVNKKPRKRMSRSAND 66


>Z66564-7|CAA91472.2|  650|Caenorhabditis elegans Hypothetical
           protein F52D10.6 protein.
          Length = 650

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 614 PVLEVPKKPRARIGRIRND 558
           P+L+V KKPR R+ R  ND
Sbjct: 48  PILKVNKKPRKRMSRSAND 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,976,931
Number of Sequences: 27780
Number of extensions: 264859
Number of successful extensions: 481
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)