Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32392
         (553 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0038 + 10865068-10865150,10865249-10865335,10865835-108659...    30   1.1  
03_06_0769 + 36134298-36134356,36134740-36134919,36134975-361350...    29   2.5  

>06_02_0038 +
           10865068-10865150,10865249-10865335,10865835-10865936,
           10867000-10870078
          Length = 1116

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 341 LQETRNITRDNKRTARAQKEQNKHQSATDDSA 436
           ++ TRN T +++ T RAQ   N  +S T D+A
Sbjct: 546 MRGTRNPTEESRSTPRAQNPVNNRRSGTSDTA 577


>03_06_0769 +
           36134298-36134356,36134740-36134919,36134975-36135007,
           36135008-36135128,36135227-36135266,36135811-36135863,
           36135937-36135998,36136354-36136506,36136949-36137160,
           36137480-36138972,36140560-36141483,36141734-36142043,
           36143818-36143874,36144114-36144167,36144452-36144510
          Length = 1269

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +2

Query: 257 TASNLPSNITNINCNFVYATNLRCFRV*LQETRNITRDN--KRTARAQKEQNKHQSATDD 430
           +A  LPS+ T +      A NLR ++  LQ+ +    +   KR  R ++E+ K  +A   
Sbjct: 767 SARRLPSSKTRLTDAQKRAQNLRAYKADLQKAKKEQEEEQIKRLERLKQERQKRIAARSS 826

Query: 431 SAN 439
           ++N
Sbjct: 827 TSN 829


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,516,298
Number of Sequences: 37544
Number of extensions: 215562
Number of successful extensions: 518
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)