Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32392
         (553 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    25   0.39 
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.2  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.2  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.2  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.2  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.2  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.2  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    24   1.2  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    24   1.2  
S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               23   1.6  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   4.8  
S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    21   6.3  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 25.4 bits (53), Expect = 0.39
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -1

Query: 142 TESVNIINFSIKNVI*YLRCFM*YAFYEYTAS-IPSFCCKE*NNNTKS 2
           +ES + I+F  KN    L+C   ++  +Y    IP+ CC    NNT S
Sbjct: 130 SESKDFIDFIQKN----LQCCGVHSLSDYNDKPIPASCCNSPENNTCS 173


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 104 CYIVFTMFYVIRIL*IYCK 48
           C IVFT+F V+  + I C+
Sbjct: 436 CLIVFTLFTVLATIVILCR 454


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 104 CYIVFTMFYVIRIL*IYCK 48
           C IVFT+F V+  + I C+
Sbjct: 436 CLIVFTLFTVLATIVILCR 454


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 104 CYIVFTMFYVIRIL*IYCK 48
           C IVFT+F V+  + I C+
Sbjct: 436 CLIVFTLFTVLATIVILCR 454


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 104 CYIVFTMFYVIRIL*IYCK 48
           C IVFT+F V+  + I C+
Sbjct: 436 CLIVFTLFTVLATIVILCR 454


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 104 CYIVFTMFYVIRIL*IYCK 48
           C IVFT+F V+  + I C+
Sbjct: 436 CLIVFTLFTVLATIVILCR 454


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 104 CYIVFTMFYVIRIL*IYCK 48
           C IVFT+F V+  + I C+
Sbjct: 436 CLIVFTLFTVLATIVILCR 454


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 104 CYIVFTMFYVIRIL*IYCK 48
           C IVFT+F V+  + I C+
Sbjct: 504 CLIVFTLFTVLATIVILCR 522



 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 99  YSIYDVLCDTHFMNILQVYLAS 34
           Y IY+ LC  H   +L   L+S
Sbjct: 44  YIIYESLCGRHEKRLLNELLSS 65


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 104 CYIVFTMFYVIRIL*IYCK 48
           C IVFT+F V+  + I C+
Sbjct: 504 CLIVFTLFTVLATIVILCR 522



 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 99  YSIYDVLCDTHFMNILQVYLAS 34
           Y IY+ LC  H   +L   L+S
Sbjct: 44  YIIYESLCGRHEKRLLNELLSS 65


>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +3

Query: 267 IYLLISQTLIVILSTLLIYDVSECNCK 347
           IYL +S   ++++++  +  V  CNCK
Sbjct: 8   IYLFLS---VILITSYFVTPVMPCNCK 31


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 368 DNKRTARAQKEQNKHQSATD 427
           +NK T +++KEQN  +   D
Sbjct: 150 NNKITMKSKKEQNAEEDIVD 169


>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +3

Query: 288 TLIVILSTLLIYDVS-ECNCKKHGI 359
           ++I+I S  +   +S +CNCK+H I
Sbjct: 13  SVILITSYFVTPTMSIKCNCKRHVI 37


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,205
Number of Sequences: 438
Number of extensions: 2744
Number of successful extensions: 15
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)