Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32391
         (509 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0001 + 20114108-20115686,20115813-20115928,20116416-201173...    27   8.8  
02_02_0537 + 11308195-11309667                                         27   8.8  
01_01_1116 + 8839946-8840048,8840142-8842064,8842192-8842307,884...    27   8.8  

>09_06_0001 +
           20114108-20115686,20115813-20115928,20116416-20117394,
           20118820-20119082
          Length = 978

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 200 YHYQICIMIKLRKI*ISKYLNEQIQILK 283
           Y YQ+    K+ +I ISKY N+  +  K
Sbjct: 901 YEYQLVFQNKITRIFISKYYNQSYEYFK 928


>02_02_0537 + 11308195-11309667
          Length = 490

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 200 YHYQICIMIKLRKI*ISKYLNEQIQILK 283
           Y YQ+    K+ +I ISKY N+  +  K
Sbjct: 438 YEYQLVFQNKITRIFISKYYNQSYEYFK 465


>01_01_1116 +
           8839946-8840048,8840142-8842064,8842192-8842307,
           8843340-8843763,8845187-8845452
          Length = 943

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 200 YHYQICIMIKLRKI*ISKYLNEQIQILK 283
           Y YQ+    K+ +I ISKY N+  +  K
Sbjct: 865 YEYQLVFQNKITRIFISKYYNQSYEYFK 892


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,679,208
Number of Sequences: 37544
Number of extensions: 116246
Number of successful extensions: 219
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)