Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32390
(428 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 78 7e-16
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 52 4e-08
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 48 5e-07
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 48 5e-07
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 48 5e-07
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 48 5e-07
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 48 5e-07
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 46 2e-06
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 33 0.019
SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha... 29 0.40
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 27 0.93
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 1.2
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 27 1.6
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 27 1.6
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 26 2.2
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2... 26 2.2
SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyce... 26 2.9
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-... 25 3.8
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 25 5.0
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac... 25 5.0
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon... 25 5.0
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 25 6.6
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S... 24 8.7
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 24 8.7
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2... 24 8.7
SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subun... 24 8.7
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 77.8 bits (183), Expect = 7e-16
Identities = 40/96 (41%), Positives = 57/96 (59%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M +T K LQQQ F I D K +LK +++ +++ + Q+LIY+G+IL DD +
Sbjct: 1 MNLTFKNLQQQKFVIS-DVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGE 59
Query: 273 YNIDEKKFIVIMVTKPKVSESQPTSTSIPEAGESAS 380
YNI E+ FIV MV++PK S S P S + P AS
Sbjct: 60 YNIKEQDFIVCMVSRPKTSTSTPKSAASPAPNPPAS 95
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 52.0 bits (119), Expect = 4e-08
Identities = 24/64 (37%), Positives = 40/64 (62%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
ML+ +KTL + +++IDP + V +K ++E ++G QRLIYAGK + DD S
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEG--IPPSQQRLIYAGKQMADDKNAES 58
Query: 273 YNID 284
Y+++
Sbjct: 59 YHLE 62
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 48.4 bits (110), Expect = 5e-07
Identities = 24/73 (32%), Positives = 45/73 (61%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D ++
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG--IPPDQQRLIFAGKQLEDGRTLSD 58
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 59 YNIQKESTLHLVL 71
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 48.4 bits (110), Expect = 5e-07
Identities = 24/73 (32%), Positives = 45/73 (61%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D ++
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG--IPPDQQRLIFAGKQLEDGRTLSD 58
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 59 YNIQKESTLHLVL 71
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 48.4 bits (110), Expect = 5e-07
Identities = 24/73 (32%), Positives = 45/73 (61%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D ++
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG--IPPDQQRLIFAGKQLEDGRTLSD 58
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 59 YNIQKESTLHLVL 71
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 48.4 bits (110), Expect = 5e-07
Identities = 24/73 (32%), Positives = 45/73 (61%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D ++
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG--IPPDQQRLIFAGKQLEDGRTLSD 58
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 59 YNIQKESTLHLVL 71
Score = 48.4 bits (110), Expect = 5e-07
Identities = 24/73 (32%), Positives = 45/73 (61%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D ++
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG--IPPDQQRLIFAGKQLEDGRTLSD 134
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 135 YNIQKESTLHLVL 147
Score = 48.4 bits (110), Expect = 5e-07
Identities = 24/73 (32%), Positives = 45/73 (61%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D ++
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG--IPPDQQRLIFAGKQLEDGRTLSD 210
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 211 YNIQKESTLHLVL 223
Score = 48.4 bits (110), Expect = 5e-07
Identities = 24/73 (32%), Positives = 45/73 (61%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D ++
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG--IPPDQQRLIFAGKQLEDGRTLSD 286
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 287 YNIQKESTLHLVL 299
Score = 48.4 bits (110), Expect = 5e-07
Identities = 24/73 (32%), Positives = 45/73 (61%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D ++
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG--IPPDQQRLIFAGKQLEDGRTLSD 362
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 363 YNIQKESTLHLVL 375
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 48.4 bits (110), Expect = 5e-07
Identities = 24/73 (32%), Positives = 45/73 (61%)
Frame = +3
Query: 93 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINS 272
M + +KTL +T +E++ +T+ +K KI+ ++G D QRLI+AGK L D ++
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG--IPPDQQRLIFAGKQLEDGRTLSD 58
Query: 273 YNIDEKKFIVIMV 311
YNI ++ + +++
Sbjct: 59 YNIQKESTLHLVL 71
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 46.0 bits (104), Expect = 2e-06
Identities = 26/85 (30%), Positives = 44/85 (51%)
Frame = +3
Query: 99 VTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINSYN 278
+T+K Q + + +D E +V ALK I D + QRLIYAG++L D+ + +Y
Sbjct: 6 LTIKAANDQKYAVTVDSESSVLALKEAIAPVA--DIEKERQRLIYAGRVLKDEESLKTYK 63
Query: 279 IDEKKFIVIMVTKPKVSESQPTSTS 353
I + I ++ T + + T+ S
Sbjct: 64 IQDGHSIHLVKTLGQNPAAAATNVS 88
>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 674
Score = 33.1 bits (72), Expect = 0.019
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +3
Query: 243 ILLDDNKINSYNIDEKKFIVIMVTKPKVSESQPTSTSIPEAGESASTDSGDA 398
+L + INS + D KK+ M P ++ Q T + EA S T SG++
Sbjct: 426 VLQKTDPINSRSFDPKKYTASMEILPPENKRQRTEKGVDEASNSTLTKSGNS 477
>SPAC1834.01 |sup45||translation release factor
eRF1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 433
Score = 28.7 bits (61), Expect = 0.40
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 207 VADHQRLIYAGKILLDDNKINSYNIDEKKF 296
V D+ +IY G+++++ NK NID + F
Sbjct: 85 VPDNGLVIYCGEVIMEGNKTRKLNIDFEPF 114
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 27.5 bits (58), Expect = 0.93
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +3
Query: 318 PKVSESQPTSTSIPEAGESASTDSGDA--KPKTVPPE 422
P + S PT+ S P AGE AS D+ +A + +T P +
Sbjct: 252 PDSNTSTPTTRSEPLAGEGASIDAENASSRQETTPSD 288
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.1 bits (57), Expect = 1.2
Identities = 18/34 (52%), Positives = 19/34 (55%)
Frame = +3
Query: 318 PKVSESQPTSTSIPEAGESASTDSGDAKPKTVPP 419
P S S TSTSIP G S+S S P TVPP
Sbjct: 109 PSTSTSCTTSTSIPPTGGSSSL-STPITP-TVPP 140
Score = 26.6 bits (56), Expect = 1.6
Identities = 18/34 (52%), Positives = 19/34 (55%)
Frame = +3
Query: 318 PKVSESQPTSTSIPEAGESASTDSGDAKPKTVPP 419
P S S TSTSIP G S+S S P TVPP
Sbjct: 166 PTTSTSCTTSTSIPPTGGSSSL-STPITP-TVPP 197
Score = 24.6 bits (51), Expect = 6.6
Identities = 17/34 (50%), Positives = 18/34 (52%)
Frame = +3
Query: 318 PKVSESQPTSTSIPEAGESASTDSGDAKPKTVPP 419
P S S TSTSIP G S+ S P TVPP
Sbjct: 223 PTTSTSCTTSTSIPTGGSSSL--STPITP-TVPP 253
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 26.6 bits (56), Expect = 1.6
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Frame = +3
Query: 108 KTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLI---YAGKILLDDNKINSY- 275
K Q+ + IDPE + + ++KG D +AD + + +I++ I+ Y
Sbjct: 1421 KRSAQEWANLNIDPEADLLIFVGRWTLQKGIDLIADITPTLLENFNSQIVVVGPVIDLYG 1480
Query: 276 NIDEKKFIVIMVTKPKVSESQPTSTSIP 359
+KF +M P S+P T +P
Sbjct: 1481 KFAAEKFTALMKKYPGRIYSRPLFTQLP 1508
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 26.6 bits (56), Expect = 1.6
Identities = 20/97 (20%), Positives = 38/97 (39%)
Frame = +3
Query: 105 LKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINSYNID 284
++ LQ + P ++V I+ E + D + L Y K +N + YN+D
Sbjct: 1 MRELQGDDSSRKSPPSDSVVKNSSPIDYEHSLKSLQDERTLNYPNKQFNSENPSSYYNMD 60
Query: 285 EKKFIVIMVTKPKVSESQPTSTSIPEAGESASTDSGD 395
+ + + ES +S + +S + GD
Sbjct: 61 DSGELCNFELEKDSLESMIHESSTALSAQSNTAQDGD 97
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 26.2 bits (55), Expect = 2.2
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = +3
Query: 315 KPKVSESQPTSTSIPE---AGESASTDSGDAKPKTVPPEEV 428
KP+ + P S PE +GES S + A PK P ++
Sbjct: 457 KPRPFTNNPNPISAPEKPTSGESLSLNPPPAMPKVFPERDI 497
>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
2|||Manual
Length = 803
Score = 26.2 bits (55), Expect = 2.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 288 KKFIVIMVTKPKVSESQPTSTSIPEAGESASTDS 389
K IVI+ + K+SE P + S+ GES + S
Sbjct: 103 KSKIVILGLRSKLSEQNPLAESVSNFGESVNNFS 136
>SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 456
Score = 25.8 bits (54), Expect = 2.9
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 315 KPKVSESQPTSTSIPEAGESASTDSGDAK 401
KPK S TST+ +G ++S++SG +K
Sbjct: 408 KPKNKPSNVTSTTSYTSGMTSSSESGSSK 436
>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
[UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 25.4 bits (53), Expect = 3.8
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = +3
Query: 126 TFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINSYNIDEKKF 296
TF I IDPE+ ALK + KD +A +R + K+++ ++++ +KF
Sbjct: 253 TFPIGIDPEKFSDALKSDVV----KDRIASIERRLQGVKVIVGVDRLDYIKGVPQKF 305
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 25.0 bits (52), Expect = 5.0
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +3
Query: 186 VEKGKDFVADHQRLIYAGKILLDDNKINSYNIDEKKFIVIMVTKPKVSESQPTSTSI 356
V K KD +A ++LLDDN +S + E T K+ Q TS+SI
Sbjct: 670 VSKNKDNIAILADREARPQLLLDDNNDSSSSSSEHLISFNNHTGNKILSRQTTSSSI 726
>SPBC365.07c |||TATA element modulatory factor homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 25.0 bits (52), Expect = 5.0
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +3
Query: 78 KKSVKMLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGK 200
K+ LVTLK + F++E+D ++ + +I++ G+
Sbjct: 506 KEHASTLVTLKQKSDKVFELELDIKDMRELYVSQIDILAGR 546
>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
of oxoglutarate dehydrogenase complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 25.0 bits (52), Expect = 5.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 315 KPKVSESQPTSTSIPEAGESASTDS 389
KPK ++S+P S P+A E+A S
Sbjct: 191 KPKPAKSEPVKQSKPKATETARPSS 215
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 24.6 bits (51), Expect = 6.6
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +3
Query: 312 TKPKVSESQPTSTSIPEAGESASTDSGDAKP 404
+KP ++ SQP+ T++ A E + S + P
Sbjct: 309 SKPSIAPSQPSKTNVSAAYEKPAELSSSSVP 339
>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 24.2 bits (50), Expect = 8.7
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Frame = +3
Query: 315 KPKVSESQPTSTSI-----PEAGESASTDSGDAKPKTVPPEE 425
KP+ + STS+ P G +++TDS + P TVP ++
Sbjct: 799 KPQGIRTPTKSTSVHTRRKPSYGSNSTTDSYGSVPDTVPLDD 840
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 24.2 bits (50), Expect = 8.7
Identities = 7/22 (31%), Positives = 16/22 (72%)
Frame = +1
Query: 34 VDKFCEQLTESSNIIRKV*KCW 99
+D+F ++ T+S + + K+ +CW
Sbjct: 1088 LDRFADENTQSVSNLMKIFRCW 1109
>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 24.2 bits (50), Expect = 8.7
Identities = 9/37 (24%), Positives = 21/37 (56%)
Frame = +3
Query: 138 EIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKIL 248
+I E + +LK+E+E+G+ + + R + K++
Sbjct: 229 QIAAENAARESRLKVEIEQGRKQLKQYMRNVENAKMI 265
>SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subunit
Rpa34 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 251
Score = 24.2 bits (50), Expect = 8.7
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +3
Query: 240 KILLDDNKINSYNIDEKKFIVIMVTKPKVSESQPTSTSIP 359
++ L D + SY +E K ++ PK+S++ T +IP
Sbjct: 121 RVFLPDEQ-GSYTSNEIKTGYVITETPKISQNIDTGITIP 159
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,676,178
Number of Sequences: 5004
Number of extensions: 32192
Number of successful extensions: 146
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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