Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32386
(353 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0181 - 28225396-28225587,28226009-28226068,28226150-282264... 29 1.4
03_06_0377 + 33498939-33499814 29 1.4
06_01_0898 + 6908826-6908974,6909059-6909428,6909510-6909929,691... 28 2.4
07_01_0138 + 1010926-1011948,1012722-1012910,1013504-1013722,101... 27 4.2
07_03_1607 + 28119886-28120239,28121097-28121153,28121377-281214... 27 5.6
06_03_0679 - 23464009-23464381,23464804-23464886,23466537-234667... 27 5.6
06_03_0080 - 16320459-16320839,16321405-16321524,16321929-163220... 27 5.6
03_05_0484 + 24808817-24809620,24810263-24810567,24811363-24812389 27 5.6
12_01_0297 - 2244793-2244945,2245337-2245396,2245529-2245628,224... 26 7.4
08_02_1619 - 28283250-28285238 26 7.4
03_05_0211 - 22020515-22020687,22020801-22020831,22022060-220221... 26 7.4
11_01_0296 - 2222329-2222481,2222777-2222836,2222965-2223064,222... 26 9.8
08_02_0388 + 16603720-16603987,16604022-16604420,16604569-16604582 26 9.8
08_01_0132 + 1055977-1056483,1058083-1058186,1058330-1058385,105... 26 9.8
07_03_0776 + 21417476-21417691,21417775-21417855,21417941-214183... 26 9.8
05_04_0095 - 17895406-17895626,17895769-17895820 26 9.8
03_02_0844 + 11695159-11695263,11695402-11695463,11695789-116958... 26 9.8
02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216 26 9.8
01_06_1183 - 35176780-35177266,35179631-35181093 26 9.8
>05_07_0181 -
28225396-28225587,28226009-28226068,28226150-28226416,
28227167-28227232,28228164-28228963,28229565-28229673,
28230391-28232097
Length = 1066
Score = 28.7 bits (61), Expect = 1.4
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 41 GRRAEFSRPRPNQHEQTIER 100
G + F PRPNQ+EQ +ER
Sbjct: 234 GNQQPFLSPRPNQNEQRVER 253
>03_06_0377 + 33498939-33499814
Length = 291
Score = 28.7 bits (61), Expect = 1.4
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = -1
Query: 311 KTWQNPPTNYVSFLSRRRNFINSP-YIRQAASIEDSQRADIACDQASVGGQCSCLEIR 141
KT N P +F++RR + Y +A E+ Q D+ + +V + CLEIR
Sbjct: 145 KTGANRPMLNAAFVARREHIYGKKIYTAKAQFCENGQFHDVVIECDTVSLKDPCLEIR 202
>06_01_0898 +
6908826-6908974,6909059-6909428,6909510-6909929,
6910017-6910315,6910390-6910648,6910732-6911041,
6911126-6911251,6911373-6911417,6911652-6911702,
6912041-6912153
Length = 713
Score = 27.9 bits (59), Expect = 2.4
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Frame = +2
Query: 2 IESARRTPVRAHAGRRAEFSR--PRPNQHEQTIERLRTNLKTTSRIAACESLGKSIDHRP 175
+E+ARR V A A R + +H+ R+R++ T R+ + S+
Sbjct: 500 LEAARRVIVDAEASIRLLDAGIVVTGEEHKMAFSRIRSSTNTIVRVLTYRANVNSVPPLA 559
Query: 176 MPDHKLYLPSGNPQSRLLAGYTG 244
+P H+ P Q+ G +G
Sbjct: 560 VPQHRPQAPVPGGQTSSSTGLSG 582
>07_01_0138 +
1010926-1011948,1012722-1012910,1013504-1013722,
1014041-1014061
Length = 483
Score = 27.1 bits (57), Expect = 4.2
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -1
Query: 98 VRLFVRVGLVAVARTPRVSRRVRGLAFCGP 9
V++ +RVG A ART +SRR R L + P
Sbjct: 39 VQILLRVGTSAAARTSVLSRRWRSLWYLLP 68
>07_03_1607 +
28119886-28120239,28121097-28121153,28121377-28121464,
28121557-28121686,28121783-28121962,28122291-28122759
Length = 425
Score = 26.6 bits (56), Expect = 5.6
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -2
Query: 73 WSRSRELRASPGVCADWRSAGR 8
W R R++ A GVC WR R
Sbjct: 77 WPRRRDVVACAGVCRSWRGIVR 98
>06_03_0679 -
23464009-23464381,23464804-23464886,23466537-23466703,
23466821-23467007,23467093-23467311
Length = 342
Score = 26.6 bits (56), Expect = 5.6
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +2
Query: 86 QTIERLRTNLKTTSRIAACESLGKSID--HRPMPD 184
+T+E N+ T R+A C + + D HR +PD
Sbjct: 235 ETLEAALANMNTYGRVALCGVISEYTDAGHRAVPD 269
>06_03_0080 -
16320459-16320839,16321405-16321524,16321929-16322072,
16322493-16322544,16323009-16323100,16323912-16324014,
16324237-16324300,16324559-16324973
Length = 456
Score = 26.6 bits (56), Expect = 5.6
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -2
Query: 184 IRHRSVVNALA*RFAGSDAR-GSFEVRSK 101
I HRSV+ ALA +F S AR G V+ K
Sbjct: 12 IPHRSVIQALADKFTSSPARSGKVAVQPK 40
>03_05_0484 + 24808817-24809620,24810263-24810567,24811363-24812389
Length = 711
Score = 26.6 bits (56), Expect = 5.6
Identities = 23/66 (34%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Frame = +2
Query: 29 RAHAGRRAEFSRPRPNQHEQTIE-RLRTNLKTT---SRIAACESLGKSIDHRPMPDHKLY 196
R H RRA R R + E+ R T LKTT SR AA G D L
Sbjct: 637 RRHLKRRAAELRRREEEEEEAAAIRSSTGLKTTMLVSRFAANAMRGVHRQRSRRADEVLM 696
Query: 197 LPSGNP 214
+P P
Sbjct: 697 MPMPKP 702
>12_01_0297 -
2244793-2244945,2245337-2245396,2245529-2245628,
2245712-2245779,2245922-2246017,2246156-2246244,
2246320-2246464,2246643-2246732,2246816-2246887,
2247052-2247132,2247361-2247492,2247613-2247690,
2247930-2248085,2248227-2248324,2248418-2248499
Length = 499
Score = 26.2 bits (55), Expect = 7.4
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 47 RAEFSRPRPNQHEQTIERLRTNLKTTSRIAA 139
R +FS H++T+E L+ +K+T ++ A
Sbjct: 30 RFDFSWGDAEYHQETLENLKVAIKSTKKLCA 60
>08_02_1619 - 28283250-28285238
Length = 662
Score = 26.2 bits (55), Expect = 7.4
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 119 TTSRIAACESLGKSIDHRPMPDHKLYLPSGNPQSRLLAGY 238
T R C +L + H P+PD L L S + LAG+
Sbjct: 71 TLPRELPCGNLSAGLAHHPVPDDLLLLLSIRLPASALAGH 110
>03_05_0211 -
22020515-22020687,22020801-22020831,22022060-22022169,
22022715-22023102,22023344-22023397,22023739-22023849,
22023956-22024015,22024618-22024694,22026155-22026188,
22026267-22027235
Length = 668
Score = 26.2 bits (55), Expect = 7.4
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +3
Query: 3 SNRPAERQSAHTPGD--ARSSRDRDQTNTNKQSNAFERTSK 119
+++ E TP + ARS+RDR Q KQ + R +K
Sbjct: 243 ADKKVEENKEETPKNKKARSARDRSQGKDKKQDGSKSREAK 283
>11_01_0296 -
2222329-2222481,2222777-2222836,2222965-2223064,
2223152-2223219,2223369-2223464,2223603-2223691,
2223762-2223906,2224100-2224189,2224271-2224342,
2224543-2224623,2224766-2224897,2225026-2225103,
2225280-2225435,2225521-2225618,2225712-2225793
Length = 499
Score = 25.8 bits (54), Expect = 9.8
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 47 RAEFSRPRPNQHEQTIERLRTNLKTTSRIAA 139
R +FS H++T+E L+ +K+T ++ A
Sbjct: 30 RFDFSWGDAEYHQETLENLKLAIKSTKKLCA 60
>08_02_0388 +
16603720-16603987,16604022-16604420,16604569-16604582
Length = 226
Score = 25.8 bits (54), Expect = 9.8
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -2
Query: 61 RELRASPGVCADWRSA 14
R L AS VC DWRSA
Sbjct: 36 RSLAASRCVCTDWRSA 51
>08_01_0132 +
1055977-1056483,1058083-1058186,1058330-1058385,
1058534-1058688,1058842-1058955,1059207-1059449
Length = 392
Score = 25.8 bits (54), Expect = 9.8
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -3
Query: 342 TTIIKLQISVQNLAKPTNK 286
TT++KLQ+++Q LAK K
Sbjct: 163 TTVVKLQVALQALAKTMQK 181
>07_03_0776 +
21417476-21417691,21417775-21417855,21417941-21418342,
21418457-21418621,21418729-21419460,21419542-21419748
Length = 600
Score = 25.8 bits (54), Expect = 9.8
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 187 QAISALWESSIEAAC 231
QA+SA W +EAAC
Sbjct: 449 QALSAAWREGVEAAC 463
>05_04_0095 - 17895406-17895626,17895769-17895820
Length = 90
Score = 25.8 bits (54), Expect = 9.8
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 160 ALA*RFAGSDARGSFEVRSKAFDCL 86
AL+ R GS RG+ E R + DCL
Sbjct: 41 ALSFRLIGSSGRGAPETRRRLADCL 65
>03_02_0844 +
11695159-11695263,11695402-11695463,11695789-11695876,
11695958-11696019,11696250-11696346,11696592-11696984,
11697072-11697611,11697856-11697966,11698102-11698242,
11698290-11698394,11698480-11698557,11699346-11699472,
11699580-11699625,11699709-11699754
Length = 666
Score = 25.8 bits (54), Expect = 9.8
Identities = 16/60 (26%), Positives = 24/60 (40%)
Frame = +2
Query: 29 RAHAGRRAEFSRPRPNQHEQTIERLRTNLKTTSRIAACESLGKSIDHRPMPDHKLYLPSG 208
R H G+ + F+ + HE+ E N + RI+ C S R P +L G
Sbjct: 186 RGHDGKMSGFAYSPQSLHERMSEDRFANENSGPRISDCSGSSISNTFRTTPHSPNFLDKG 245
>02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216
Length = 1030
Score = 25.8 bits (54), Expect = 9.8
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +2
Query: 8 SARRTPVRAHAGRRAEFSRPRPNQHEQTIERLRTNLKTTSRIAACESLGKSI 163
SARRTP A AG+ E S +P++ + +++ SRI + K +
Sbjct: 31 SARRTPAAAAAGK--ENSASKPSKPTAAVRWSTSSIPRASRIPSSVESSKLV 80
>01_06_1183 - 35176780-35177266,35179631-35181093
Length = 649
Score = 25.8 bits (54), Expect = 9.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 156 LPRDSQAAMREVVLRFVRRRSIVCSC 79
LPR + +REV+L R ++IV C
Sbjct: 81 LPRSASLCLREVLLVLQRFKAIVADC 106
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,633,164
Number of Sequences: 37544
Number of extensions: 220388
Number of successful extensions: 702
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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